Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24890

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,748,152	+	pstC	LU632_RS24885	0.24	+0.7
4,748,153	-	pstC	LU632_RS24885	0.24	+1.2
4,748,204	-	pstC	LU632_RS24885	0.30	-0.2
4,748,302	+	pstC	LU632_RS24885	0.40	-0.6
4,748,343	-	pstC	LU632_RS24885	0.44	+0.1
4,748,377	+	pstC	LU632_RS24885	0.48	-1.5
4,748,378	-	pstC	LU632_RS24885	0.48	-1.3
4,748,659	+	pstC	LU632_RS24885	0.77	-0.6
4,748,659	+	pstC	LU632_RS24885	0.77	+0.7
4,748,663	-	pstC	LU632_RS24885	0.77	-0.6
4,748,720	-	pstC	LU632_RS24885	0.83	+0.5
4,748,794	+				-2.5
4,748,929	-				+1.7
4,748,952	+				-2.8
4,749,035	+	pstA	LU632_RS24890	0.18	-0.6
4,749,276	+	pstA	LU632_RS24890	0.45	+0.1
4,749,276	+	pstA	LU632_RS24890	0.45	-0.9
4,749,277	-	pstA	LU632_RS24890	0.45	-0.9
4,749,298	+	pstA	LU632_RS24890	0.47	+1.7
4,749,440	-	pstA	LU632_RS24890	0.63	-0.9
4,749,469	-	pstA	LU632_RS24890	0.67	-2.0
4,749,469	-	pstA	LU632_RS24890	0.67	+2.7
4,749,726	+				+1.7
4,749,727	-				-0.0
4,749,763	+				+0.1
4,749,773	-				+0.4
4,749,791	-				-0.9
4,749,889	+	pstB	LU632_RS24895	0.10	-0.9
4,749,902	-	pstB	LU632_RS24895	0.12	+0.8
4,749,904	+	pstB	LU632_RS24895	0.12	+0.1
4,750,061	-	pstB	LU632_RS24895	0.33	-2.5
4,750,123	+	pstB	LU632_RS24895	0.41	-0.6
4,750,135	+	pstB	LU632_RS24895	0.42	+1.0
4,750,240	+	pstB	LU632_RS24895	0.56	-0.9
4,750,261	+	pstB	LU632_RS24895	0.59	-0.3
4,750,261	+	pstB	LU632_RS24895	0.59	+0.7
4,750,389	+	pstB	LU632_RS24895	0.75	+0.7
4,750,389	+	pstB	LU632_RS24895	0.75	+0.7
4,750,438	+	pstB	LU632_RS24895	0.82	+0.7
4,750,439	-	pstB	LU632_RS24895	0.82	+0.1
4,750,478	-	pstB	LU632_RS24895	0.87	+0.1
4,750,556	+				-0.5
4,750,556	+				-0.6
4,750,556	+				+0.8