Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24615

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24610 and LU632_RS24615 are separated by 445 nucleotidesLU632_RS24615 and LU632_RS24620 are separated by 94 nucleotidesLU632_RS24620 and LU632_RS24625 overlap by 23 nucleotides LU632_RS24610: LU632_RS24610 - IS3 family transposase, at 4,690,032 to 4,691,152 _RS24610 LU632_RS24615: LU632_RS24615 - hypothetical protein, at 4,691,598 to 4,691,789 _RS24615 LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450 _RS24620 LU632_RS24625: LU632_RS24625 - hypothetical protein, at 4,692,428 to 4,692,643 _RS24625 Position (kb) 4691 4692Strain fitness (log2 ratio) -1 0 1at 4691.159 kb on + strandat 4691.214 kb on + strandat 4691.214 kb on + strandat 4691.225 kb on - strandat 4691.225 kb on - strandat 4691.323 kb on - strandat 4691.464 kb on - strandat 4691.612 kb on - strandat 4691.887 kb on + strandat 4691.887 kb on + strandat 4691.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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4,691,159 + -0.6
4,691,214 + +0.1
4,691,214 + -0.6
4,691,225 - +0.1
4,691,225 - +0.4
4,691,323 - +0.4
4,691,464 - +0.3
4,691,612 - +0.9
4,691,887 + -1.3
4,691,887 + +0.2
4,691,889 + -0.3

Or see this region's nucleotide sequence