Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24485 and LU632_RS24490 are separated by 537 nucleotides LU632_RS24490 and LU632_RS24495 overlap by 23 nucleotides LU632_RS24495 and LU632_RS24500 are separated by 96 nucleotides
LU632_RS24485: LU632_RS24485 - 16S ribosomal RNA, at 4,670,138 to 4,671,679
_RS24485
LU632_RS24490: LU632_RS24490 - hypothetical protein, at 4,672,217 to 4,672,414
_RS24490
LU632_RS24495: LU632_RS24495 - IS6 family transposase, at 4,672,392 to 4,673,088
_RS24495
LU632_RS24500: LU632_RS24500 - glycoside hydrolase family 5 protein, at 4,673,185 to 4,674,072
_RS24500
Position (kb) 4672
4673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4671.977 kb on + strand at 4672.078 kb on - strand at 4672.130 kb on + strand at 4672.131 kb on - strand at 4672.158 kb on - strand at 4672.162 kb on - strand at 4672.168 kb on - strand at 4672.195 kb on + strand at 4672.196 kb on - strand at 4672.237 kb on + strand, within LU632_RS24490 at 4672.300 kb on + strand, within LU632_RS24490 at 4672.361 kb on - strand, within LU632_RS24490 at 4672.394 kb on - strand at 4672.397 kb on - strand at 4672.471 kb on + strand, within LU632_RS24495 at 4672.471 kb on + strand, within LU632_RS24495 at 4672.472 kb on - strand, within LU632_RS24495 at 4672.476 kb on + strand, within LU632_RS24495 at 4672.476 kb on + strand, within LU632_RS24495 at 4672.641 kb on + strand, within LU632_RS24495 at 4672.641 kb on + strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.643 kb on + strand, within LU632_RS24495 at 4672.644 kb on - strand, within LU632_RS24495 at 4672.667 kb on + strand, within LU632_RS24495 at 4672.668 kb on - strand, within LU632_RS24495 at 4672.673 kb on + strand, within LU632_RS24495 at 4672.836 kb on + strand, within LU632_RS24495 at 4672.837 kb on - strand, within LU632_RS24495 at 4672.837 kb on - strand, within LU632_RS24495 at 4672.886 kb on - strand, within LU632_RS24495 at 4672.890 kb on - strand, within LU632_RS24495 at 4672.925 kb on - strand, within LU632_RS24495 at 4673.028 kb on - strand at 4673.071 kb on + strand at 4673.193 kb on + strand at 4673.218 kb on - strand at 4673.218 kb on - strand at 4673.218 kb on - strand at 4673.221 kb on + strand at 4673.221 kb on - strand at 4673.222 kb on - strand at 4673.319 kb on + strand, within LU632_RS24500 at 4673.360 kb on - strand, within LU632_RS24500 at 4673.360 kb on - strand, within LU632_RS24500 at 4673.362 kb on - strand, within LU632_RS24500 at 4673.390 kb on - strand, within LU632_RS24500
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 4,671,977 + -1.8 4,672,078 - -1.9 4,672,130 + +0.1 4,672,131 - -0.4 4,672,158 - +0.1 4,672,162 - +0.8 4,672,168 - +2.3 4,672,195 + +1.6 4,672,196 - -0.6 4,672,237 + LU632_RS24490 0.10 -1.8 4,672,300 + LU632_RS24490 0.42 +0.7 4,672,361 - LU632_RS24490 0.73 -0.5 4,672,394 - +0.4 4,672,397 - +0.9 4,672,471 + LU632_RS24495 0.11 +0.1 4,672,471 + LU632_RS24495 0.11 +1.9 4,672,472 - LU632_RS24495 0.11 -1.0 4,672,476 + LU632_RS24495 0.12 -0.1 4,672,476 + LU632_RS24495 0.12 +1.0 4,672,641 + LU632_RS24495 0.36 -1.3 4,672,641 + LU632_RS24495 0.36 +1.7 4,672,642 - LU632_RS24495 0.36 +2.2 4,672,642 - LU632_RS24495 0.36 -1.0 4,672,642 - LU632_RS24495 0.36 -0.0 4,672,643 + LU632_RS24495 0.36 +0.6 4,672,644 - LU632_RS24495 0.36 -0.2 4,672,667 + LU632_RS24495 0.39 +0.5 4,672,668 - LU632_RS24495 0.40 -0.6 4,672,673 + LU632_RS24495 0.40 -0.4 4,672,836 + LU632_RS24495 0.64 -0.9 4,672,837 - LU632_RS24495 0.64 -2.5 4,672,837 - LU632_RS24495 0.64 -3.1 4,672,886 - LU632_RS24495 0.71 -0.8 4,672,890 - LU632_RS24495 0.71 -0.4 4,672,925 - LU632_RS24495 0.76 +0.2 4,673,028 - +2.1 4,673,071 + -2.1 4,673,193 + +0.7 4,673,218 - -0.5 4,673,218 - -0.3 4,673,218 - +0.3 4,673,221 + +0.7 4,673,221 - +1.0 4,673,222 - -0.6 4,673,319 + LU632_RS24500 0.15 -1.3 4,673,360 - LU632_RS24500 0.20 +2.3 4,673,360 - LU632_RS24500 0.20 +1.0 4,673,362 - LU632_RS24500 0.20 -1.4 4,673,390 - LU632_RS24500 0.23 -0.4
Or see this region's nucleotide sequence