Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24420

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,657,830	-	ilvG	LU632_RS24415	0.52	-1.1
4,657,893	+	ilvG	LU632_RS24415	0.56	+0.1
4,657,894	-	ilvG	LU632_RS24415	0.56	-0.1
4,658,020	-	ilvG	LU632_RS24415	0.63	-0.4
4,658,045	+	ilvG	LU632_RS24415	0.65	-1.5
4,658,046	-	ilvG	LU632_RS24415	0.65	+0.6
4,658,144	-	ilvG	LU632_RS24415	0.71	+3.4
4,658,153	+	ilvG	LU632_RS24415	0.71	+0.4
4,658,153	+	ilvG	LU632_RS24415	0.71	-0.2
4,658,154	-	ilvG	LU632_RS24415	0.71	-1.5
4,658,155	+	ilvG	LU632_RS24415	0.72	+0.4
4,658,214	-	ilvG	LU632_RS24415	0.75	+0.5
4,658,260	+	ilvG	LU632_RS24415	0.78	-0.5
4,658,282	+	ilvG	LU632_RS24415	0.79	-0.1
4,658,315	-	ilvG	LU632_RS24415	0.81	-0.6
4,658,498	+				-1.8
4,658,498	+				+0.0
4,658,498	+				+0.1
4,658,498	+				-0.6
4,658,499	-				-0.3
4,658,499	-				-0.6
4,658,499	-				-2.2
4,658,623	+				+3.9
4,658,805	+		LU632_RS24420	0.41	-1.8
4,658,895	+				-0.2
4,659,058	-				-0.5
4,659,095	+				-0.6
4,659,207	+				+0.3
4,659,216	+				-3.0
4,659,217	-				+1.5
4,659,217	-				-0.8
4,659,227	+				+0.2
4,659,227	+				+0.2
4,659,228	-				-0.3
4,659,367	-		LU632_RS24425	0.10	+0.7
4,659,367	-		LU632_RS24425	0.10	+0.2
4,659,367	-		LU632_RS24425	0.10	+0.3
4,659,367	-		LU632_RS24425	0.10	+0.2
4,659,367	-		LU632_RS24425	0.10	-1.1
4,659,367	-		LU632_RS24425	0.10	-0.9
4,659,370	+		LU632_RS24425	0.11	+2.8
4,659,371	-		LU632_RS24425	0.11	+0.4
4,659,400	+		LU632_RS24425	0.13	-0.6
4,659,400	+		LU632_RS24425	0.13	-0.1
4,659,555	+		LU632_RS24425	0.23	-1.1
4,659,556	-		LU632_RS24425	0.23	+0.4
4,659,556	-		LU632_RS24425	0.23	-0.9
4,659,616	+		LU632_RS24425	0.27	+5.2
4,659,616	+		LU632_RS24425	0.27	+0.1
4,659,736	+		LU632_RS24425	0.35	-0.8
4,659,736	+		LU632_RS24425	0.35	+1.2
4,659,741	-		LU632_RS24425	0.35	+0.6
4,659,787	+		LU632_RS24425	0.38	+0.9
4,659,788	-		LU632_RS24425	0.38	+2.2
4,659,805	+		LU632_RS24425	0.39	-0.4
4,659,805	+		LU632_RS24425	0.39	+1.7
4,659,842	-		LU632_RS24425	0.42	-0.3
4,659,846	+		LU632_RS24425	0.42	+0.5
4,659,847	-		LU632_RS24425	0.42	-2.0
4,659,847	-		LU632_RS24425	0.42	-0.3
4,659,847	-		LU632_RS24425	0.42	+2.1
4,659,852	+		LU632_RS24425	0.42	+2.2
4,659,853	-		LU632_RS24425	0.42	+0.1
4,659,853	-		LU632_RS24425	0.42	+2.1
4,659,855	+		LU632_RS24425	0.42	-0.5
4,659,855	+		LU632_RS24425	0.42	+1.2
4,659,856	-		LU632_RS24425	0.42	-0.1