Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24400

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,652,963	+	ilvA	LU632_RS24395	0.42	-0.8
4,652,965	+	ilvA	LU632_RS24395	0.43	-1.1
4,652,965	+	ilvA	LU632_RS24395	0.43	-0.3
4,652,965	+	ilvA	LU632_RS24395	0.43	+0.9
4,652,966	-	ilvA	LU632_RS24395	0.43	-1.8
4,652,966	-	ilvA	LU632_RS24395	0.43	-1.0
4,653,088	+	ilvA	LU632_RS24395	0.50	-1.6
4,653,089	-	ilvA	LU632_RS24395	0.51	-0.2
4,653,261	-	ilvA	LU632_RS24395	0.62	-1.2
4,653,407	+	ilvA	LU632_RS24395	0.71	-2.2
4,653,407	+	ilvA	LU632_RS24395	0.71	-1.4
4,653,407	+	ilvA	LU632_RS24395	0.71	+0.4
4,653,407	+	ilvA	LU632_RS24395	0.71	-0.3
4,653,407	+	ilvA	LU632_RS24395	0.71	-0.5
4,653,408	-	ilvA	LU632_RS24395	0.71	+1.0
4,653,408	-	ilvA	LU632_RS24395	0.71	+2.1
4,653,408	-	ilvA	LU632_RS24395	0.71	-1.3
4,653,408	-	ilvA	LU632_RS24395	0.71	-1.1
4,653,408	-	ilvA	LU632_RS24395	0.71	-1.5
4,653,408	-	ilvA	LU632_RS24395	0.71	-0.6
4,653,408	-	ilvA	LU632_RS24395	0.71	+0.4
4,653,409	+	ilvA	LU632_RS24395	0.71	-1.5
4,653,410	-	ilvA	LU632_RS24395	0.71	-1.3
4,653,516	-	ilvA	LU632_RS24395	0.78	+0.4
4,653,678	-	ilvA	LU632_RS24395	0.88	-1.0
4,653,742	-				+0.1
4,653,784	+				-0.8
4,653,784	+				-0.2
4,653,784	+				-0.9
4,653,784	+				-3.3
4,653,785	-				-1.6
4,653,814	+				-1.5
4,653,894	-				-1.1
4,653,894	-				-2.8
4,653,930	+				-1.8
4,653,931	-				-1.9
4,653,968	-				-0.1
4,653,976	+				-2.4
4,653,978	+				-0.9
4,653,979	-				-0.3
4,653,979	-				-0.2
4,654,066	+	ilvD	LU632_RS24400	0.11	-1.1
4,654,081	+	ilvD	LU632_RS24400	0.12	-2.6
4,654,081	+	ilvD	LU632_RS24400	0.12	-1.7
4,654,224	+	ilvD	LU632_RS24400	0.19	-1.5
4,654,224	+	ilvD	LU632_RS24400	0.19	-1.6
4,654,225	-	ilvD	LU632_RS24400	0.19	-1.1
4,654,414	+	ilvD	LU632_RS24400	0.30	-1.5
4,654,415	-	ilvD	LU632_RS24400	0.30	+0.2
4,654,440	+	ilvD	LU632_RS24400	0.31	-0.6
4,654,440	+	ilvD	LU632_RS24400	0.31	-1.6
4,654,441	-	ilvD	LU632_RS24400	0.31	-3.1
4,654,504	+	ilvD	LU632_RS24400	0.34	-1.2
4,654,558	+	ilvD	LU632_RS24400	0.37	-0.3
4,654,626	+	ilvD	LU632_RS24400	0.41	-1.1
4,654,626	+	ilvD	LU632_RS24400	0.41	-0.8
4,654,627	-	ilvD	LU632_RS24400	0.41	-1.8
4,654,627	-	ilvD	LU632_RS24400	0.41	-2.0
4,654,627	-	ilvD	LU632_RS24400	0.41	+1.4
4,654,679	-	ilvD	LU632_RS24400	0.44	-1.3
4,654,683	-	ilvD	LU632_RS24400	0.44	-1.9
4,654,683	-	ilvD	LU632_RS24400	0.44	+1.4
4,654,829	-	ilvD	LU632_RS24400	0.52	+0.5
4,654,882	+	ilvD	LU632_RS24400	0.55	+0.1
4,654,883	-	ilvD	LU632_RS24400	0.55	-1.8
4,654,955	+	ilvD	LU632_RS24400	0.59	-2.2
4,655,002	+	ilvD	LU632_RS24400	0.61	-2.3
4,655,002	+	ilvD	LU632_RS24400	0.61	-1.9
4,655,003	-	ilvD	LU632_RS24400	0.61	-0.5
4,655,003	-	ilvD	LU632_RS24400	0.61	-3.1
4,655,328	-	ilvD	LU632_RS24400	0.79	-1.5
4,655,356	+	ilvD	LU632_RS24400	0.80	-0.9
4,655,400	+	ilvD	LU632_RS24400	0.83	-3.1
4,655,400	+	ilvD	LU632_RS24400	0.83	-1.1
4,655,401	-	ilvD	LU632_RS24400	0.83	-1.7
4,655,401	-	ilvD	LU632_RS24400	0.83	-1.9
4,655,443	-	ilvD	LU632_RS24400	0.85	-1.3
4,655,596	+				+0.1
4,655,675	-				-2.2
4,655,706	+				-2.1
4,655,707	-				-0.2
4,655,711	-				-0.6
4,655,711	-				-2.3
4,655,722	+				-0.5
4,655,739	-				+0.1
4,655,889	+		LU632_RS24405	0.12	-2.5
4,655,889	+		LU632_RS24405	0.12	-1.6
4,655,889	+		LU632_RS24405	0.12	-2.4
4,655,945	+		LU632_RS24405	0.18	+1.4
4,655,946	-		LU632_RS24405	0.18	-1.5
4,655,965	+		LU632_RS24405	0.20	-3.8
4,655,966	-		LU632_RS24405	0.21	+0.2
4,655,968	-		LU632_RS24405	0.21	-2.1
4,655,968	-		LU632_RS24405	0.21	-0.9
4,655,968	-		LU632_RS24405	0.21	-2.6
4,656,026	+		LU632_RS24405	0.27	-1.1
4,656,027	-		LU632_RS24405	0.27	-2.3
4,656,081	-		LU632_RS24405	0.33	-0.3
4,656,134	+		LU632_RS24405	0.39	-1.6
4,656,134	+		LU632_RS24405	0.39	-1.5
4,656,135	-		LU632_RS24405	0.39	-1.3
4,656,135	-		LU632_RS24405	0.39	-1.9
4,656,136	+		LU632_RS24405	0.39	+0.4
4,656,214	+		LU632_RS24405	0.47	-2.5
4,656,215	-		LU632_RS24405	0.47	-2.7
4,656,219	-		LU632_RS24405	0.48	+2.1
4,656,219	-		LU632_RS24405	0.48	-2.4
4,656,219	-		LU632_RS24405	0.48	-0.5
4,656,219	-		LU632_RS24405	0.48	-1.8
4,656,249	-		LU632_RS24405	0.51	-1.7
4,656,251	+		LU632_RS24405	0.51	-2.9
4,656,251	+		LU632_RS24405	0.51	+0.2
4,656,319	+		LU632_RS24405	0.58	-0.9
4,656,319	+		LU632_RS24405	0.58	-1.5
4,656,320	-		LU632_RS24405	0.59	-1.5
4,656,344	+		LU632_RS24405	0.61	-2.0
4,656,419	+		LU632_RS24405	0.69	-2.1
4,656,420	-		LU632_RS24405	0.69	-2.0
4,656,421	+		LU632_RS24405	0.69	-4.0
4,656,421	+		LU632_RS24405	0.69	-2.4
4,656,422	-		LU632_RS24405	0.70	-0.3
4,656,422	-		LU632_RS24405	0.70	-1.8
4,656,488	-		LU632_RS24405	0.77	-2.1
4,656,488	-		LU632_RS24405	0.77	-1.2
4,656,581	-		LU632_RS24405	0.87	-0.9
4,656,609	-		LU632_RS24405	0.90	-0.6
4,656,609	-		LU632_RS24405	0.90	-1.5
4,656,609	-		LU632_RS24405	0.90	-0.6
4,656,609	-		LU632_RS24405	0.90	-1.3
4,656,659	+				+0.1
4,656,660	-				-2.0
4,656,660	-				-1.7
4,656,683	+				+0.3
4,656,684	-				-3.4