Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24115

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,597,913	-		LU632_RS24105	0.89	-1.7
4,597,968	+				-2.8
4,597,968	+				+0.1
4,597,980	+				+1.2
4,597,980	+				+3.0
4,597,981	-				+0.2
4,597,981	-				+0.7
4,598,044	+				-0.3
4,598,045	-				-1.1
4,598,071	+				+0.2
4,598,072	-				-1.5
4,598,072	-				-0.8
4,598,076	+				-1.3
4,598,082	+				+0.3
4,598,083	-				-0.9
4,598,220	-	rarD	LU632_RS24110	0.25	+0.2
4,598,247	+	rarD	LU632_RS24110	0.28	-0.8
4,598,311	+	rarD	LU632_RS24110	0.35	+0.0
4,598,319	+	rarD	LU632_RS24110	0.36	+0.0
4,598,483	+	rarD	LU632_RS24110	0.54	-2.5
4,598,483	+	rarD	LU632_RS24110	0.54	+0.3
4,598,483	+	rarD	LU632_RS24110	0.54	-1.2
4,598,484	-	rarD	LU632_RS24110	0.54	-0.4
4,598,484	-	rarD	LU632_RS24110	0.54	+0.4
4,598,484	-	rarD	LU632_RS24110	0.54	+0.1
4,598,485	+	rarD	LU632_RS24110	0.54	-3.4
4,598,485	+	rarD	LU632_RS24110	0.54	-0.5
4,598,485	+	rarD	LU632_RS24110	0.54	+0.9
4,598,485	+	rarD	LU632_RS24110	0.54	-0.6
4,598,485	+	rarD	LU632_RS24110	0.54	+1.0
4,598,486	-	rarD	LU632_RS24110	0.54	-0.9
4,598,486	-	rarD	LU632_RS24110	0.54	+1.1
4,598,486	-	rarD	LU632_RS24110	0.54	-1.8
4,598,658	+	rarD	LU632_RS24110	0.73	+0.1
4,598,658	+	rarD	LU632_RS24110	0.73	-1.5
4,598,658	+	rarD	LU632_RS24110	0.73	+0.3
4,598,658	+	rarD	LU632_RS24110	0.73	+1.5
4,598,660	+	rarD	LU632_RS24110	0.74	+0.6
4,598,661	-	rarD	LU632_RS24110	0.74	+0.1
4,598,661	-	rarD	LU632_RS24110	0.74	-0.0
4,598,661	-	rarD	LU632_RS24110	0.74	-1.3
4,598,820	+				+0.5
4,598,820	+				-0.9
4,598,821	-				+0.2
4,598,895	-				+0.5
4,599,985	-				+0.7
4,599,987	-				+2.1
4,599,987	-				+2.1
4,600,110	+				-0.4
4,600,129	+				-1.3
4,600,130	-				-0.8
4,600,130	-				-0.5
4,600,130	-				-0.0
4,600,130	-				-0.4
4,600,262	+		LU632_RS24120	0.30	+0.4
4,600,262	+		LU632_RS24120	0.30	+2.0
4,600,262	+		LU632_RS24120	0.30	-0.3
4,600,262	+		LU632_RS24120	0.30	+0.9
4,600,262	+		LU632_RS24120	0.30	+0.2
4,600,262	+		LU632_RS24120	0.30	+3.7
4,600,262	+		LU632_RS24120	0.30	+0.4
4,600,262	+		LU632_RS24120	0.30	-0.5
4,600,262	+		LU632_RS24120	0.30	-0.3
4,600,262	+		LU632_RS24120	0.30	-0.7
4,600,262	+		LU632_RS24120	0.30	+0.7
4,600,262	+		LU632_RS24120	0.30	-0.8
4,600,262	+		LU632_RS24120	0.30	+0.3
4,600,263	+		LU632_RS24120	0.30	+0.1
4,600,263	-		LU632_RS24120	0.30	+0.3
4,600,263	-		LU632_RS24120	0.30	-0.6
4,600,263	-		LU632_RS24120	0.30	+0.7
4,600,263	-		LU632_RS24120	0.30	-0.1
4,600,263	-		LU632_RS24120	0.30	-0.3
4,600,263	-		LU632_RS24120	0.30	+0.4
4,600,263	-		LU632_RS24120	0.30	-0.4
4,600,263	-		LU632_RS24120	0.30	-1.2
4,600,263	-		LU632_RS24120	0.30	-0.0
4,600,263	-		LU632_RS24120	0.30	-1.3
4,600,263	-		LU632_RS24120	0.30	-0.5
4,600,263	-		LU632_RS24120	0.30	-1.5
4,600,263	-		LU632_RS24120	0.30	+0.1
4,600,263	-		LU632_RS24120	0.30	+1.3
4,600,263	-		LU632_RS24120	0.30	-1.8
4,600,263	-		LU632_RS24120	0.30	+0.8
4,600,263	-		LU632_RS24120	0.30	+0.5
4,600,263	-		LU632_RS24120	0.30	+1.2
4,600,263	-		LU632_RS24120	0.30	-0.3
4,600,264	+		LU632_RS24120	0.30	+0.1
4,600,389	+		LU632_RS24120	0.57	+1.4
4,600,475	+		LU632_RS24120	0.75	-1.3
4,600,549	-				-1.7
4,600,633	+				+2.2
4,600,777	+				-1.2
4,600,777	+				+1.3
4,600,778	-				+0.3