Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23500

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,481,920	-		LU632_RS23490	0.77	+0.9
4,481,926	-		LU632_RS23490	0.78	-0.7
4,482,018	+				+0.3
4,482,019	-				-0.6
4,482,061	+				+1.0
4,482,085	-				+0.7
4,482,105	+				-0.9
4,482,108	+				+1.4
4,482,108	+				-0.1
4,482,108	+				-0.7
4,482,109	-				-0.7
4,482,109	-				+0.3
4,482,109	-				+1.5
4,482,110	+				-1.1
4,482,110	+				-0.5
4,482,111	-				-0.4
4,482,111	-				+1.5
4,482,119	+				+2.5
4,482,156	+				-2.3
4,482,181	-				+2.4
4,482,199	-				-1.9
4,482,249	+				-1.4
4,482,250	-				+0.1
4,482,256	+				+1.2
4,482,326	+		LU632_RS23495	0.19	-0.7
4,482,361	+		LU632_RS23495	0.24	-1.7
4,482,374	-		LU632_RS23495	0.26	-1.1
4,482,374	-		LU632_RS23495	0.26	+1.0
4,482,537	+		LU632_RS23495	0.49	-0.3
4,482,606	-		LU632_RS23495	0.59	+1.6
4,482,662	+		LU632_RS23495	0.67	+0.6
4,482,663	-		LU632_RS23495	0.67	-0.4
4,482,686	+		LU632_RS23495	0.70	-0.9
4,482,687	-		LU632_RS23495	0.70	+0.6
4,482,763	-		LU632_RS23495	0.81	+0.2
4,482,784	-		LU632_RS23495	0.84	+0.1
4,482,794	+		LU632_RS23495	0.86	+0.3
4,482,804	+		LU632_RS23495	0.87	-1.4
4,482,863	+				-1.3
4,482,902	+				-0.9
4,482,909	-				+1.0
4,482,955	+		LU632_RS23500	0.15	+0.1
4,482,967	+		LU632_RS23500	0.18	+1.4
4,482,967	+		LU632_RS23500	0.18	-1.7
4,482,967	+		LU632_RS23500	0.18	-0.3
4,482,968	-		LU632_RS23500	0.18	+0.3
4,482,968	-		LU632_RS23500	0.18	+1.0
4,483,030	-		LU632_RS23500	0.32	+0.1
4,483,043	-		LU632_RS23500	0.35	-0.5
4,483,074	+		LU632_RS23500	0.42	+0.9
4,483,185	+		LU632_RS23500	0.68	-0.5
4,483,272	-		LU632_RS23500	0.88	+4.9
4,483,328	+				+1.0
4,483,328	+				+1.9
4,483,329	-				-1.5
4,483,388	-				-1.6
4,483,777	+		LU632_RS23505	0.27	+0.1
4,483,826	-		LU632_RS23505	0.32	+0.7