Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22085

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,216,311	+		LU632_RS22075	0.82	-1.0
4,216,312	-		LU632_RS22075	0.82	+1.8
4,216,443	-				-0.6
4,216,449	+				+0.1
4,216,449	+				-0.7
4,216,450	-				-2.2
4,216,500	-				+0.6
4,216,504	+				+0.7
4,216,589	+				+0.2
4,216,624	-		LU632_RS22080	0.14	+0.9
4,216,625	+		LU632_RS22080	0.14	+1.0
4,216,625	+		LU632_RS22080	0.14	+1.0
4,216,626	-		LU632_RS22080	0.14	+0.0
4,216,649	-		LU632_RS22080	0.17	-0.3
4,216,806	+		LU632_RS22080	0.37	+1.5
4,216,807	-		LU632_RS22080	0.37	+0.5
4,216,871	-		LU632_RS22080	0.46	-0.2
4,216,938	-		LU632_RS22080	0.54	+0.1
4,216,938	-		LU632_RS22080	0.54	+1.4
4,216,982	+		LU632_RS22080	0.60	+1.2
4,216,983	-		LU632_RS22080	0.60	+2.2
4,217,098	+		LU632_RS22080	0.75	-2.1
4,217,098	+		LU632_RS22080	0.75	-1.5
4,217,098	+		LU632_RS22080	0.75	-0.4
4,217,099	-		LU632_RS22080	0.75	-0.2
4,217,140	+		LU632_RS22080	0.81	+0.7
4,217,141	-		LU632_RS22080	0.81	-1.4
4,217,146	+		LU632_RS22080	0.81	+0.4
4,217,147	-		LU632_RS22080	0.81	-0.2
4,217,147	-		LU632_RS22080	0.81	+0.2
4,217,161	-		LU632_RS22080	0.83	+1.2
4,217,161	-		LU632_RS22080	0.83	+1.1
4,217,195	-		LU632_RS22080	0.88	-1.0
4,217,195	-		LU632_RS22080	0.88	-1.0
4,217,229	-				+0.3
4,217,229	-				+0.3
4,217,272	-				-0.8
4,217,273	+				+1.6
4,217,273	+				+1.1
4,217,282	+				-1.7
4,217,282	+				+1.6
4,217,357	+				-0.8
4,217,358	-				-0.2
4,217,720	-		LU632_RS22085	0.30	+0.5
4,217,765	+		LU632_RS22085	0.33	+4.5
4,217,765	+		LU632_RS22085	0.33	+0.0
4,217,889	-		LU632_RS22085	0.42	+0.1
4,217,889	-		LU632_RS22085	0.42	+0.2
4,217,993	-		LU632_RS22085	0.50	+1.4
4,217,993	-		LU632_RS22085	0.50	+1.3
4,217,993	-		LU632_RS22085	0.50	+1.2
4,217,997	-		LU632_RS22085	0.50	+0.5
4,218,199	-		LU632_RS22085	0.65	+2.1
4,218,199	-		LU632_RS22085	0.65	+0.0
4,218,245	-		LU632_RS22085	0.68	-0.1
4,218,452	-		LU632_RS22085	0.83	-0.5
4,218,528	-		LU632_RS22085	0.88	+2.2
4,218,528	-		LU632_RS22085	0.88	-0.5
4,218,528	-		LU632_RS22085	0.88	-1.7
4,218,695	-				-2.0
4,218,698	-				-1.4
4,218,751	-		LU632_RS22090	0.25	+0.5
4,218,925	+				+0.3
4,218,925	+				-0.5
4,218,926	-				-1.7
4,218,926	-				-0.5
4,218,963	+				-0.6
4,218,963	+				+0.9
4,218,964	-				+0.5
4,219,016	+				+0.3
4,219,018	+				-2.5
4,219,019	-				-1.2
4,219,115	+				-2.4
4,219,115	+				-0.1
4,219,115	+				+0.4
4,219,115	+				-2.1
4,219,115	+				-1.5
4,219,115	+				+0.2
4,219,115	+				-1.1
4,219,115	+				-1.1
4,219,116	-				+0.2
4,219,116	-				+0.2
4,219,116	-				+0.3
4,219,116	-				-0.2
4,219,116	-				+0.8
4,219,116	-				+0.3
4,219,274	+		LU632_RS22095	0.25	+2.4
4,219,286	+		LU632_RS22095	0.27	+0.4
4,219,287	-		LU632_RS22095	0.27	+2.0
4,219,333	-		LU632_RS22095	0.32	+0.4
4,219,367	+		LU632_RS22095	0.35	-0.2
4,219,367	+		LU632_RS22095	0.35	-0.1
4,219,368	-		LU632_RS22095	0.35	-1.7
4,219,368	-		LU632_RS22095	0.35	-0.0
4,219,408	-		LU632_RS22095	0.40	+0.0
4,219,415	+		LU632_RS22095	0.40	+2.6
4,219,505	+		LU632_RS22095	0.50	-1.9
4,219,506	-		LU632_RS22095	0.50	-1.7
4,219,506	-		LU632_RS22095	0.50	-1.5
4,219,507	+		LU632_RS22095	0.50	-0.5
4,219,508	-		LU632_RS22095	0.50	-0.6
4,219,583	-		LU632_RS22095	0.58	+0.3
4,219,635	-		LU632_RS22095	0.63	+0.4
4,219,662	+		LU632_RS22095	0.66	-0.5
4,219,662	+		LU632_RS22095	0.66	+2.5
4,219,663	-		LU632_RS22095	0.66	-0.9