Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21830

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,169,579	+				+1.9
4,169,582	-				-0.7
4,169,601	+				-0.4
4,169,604	-				-2.0
4,169,624	-				+1.0
4,169,686	+				-0.5
4,169,699	-				-0.1
4,169,871	-		LU632_RS21825	0.30	-1.7
4,169,871	-		LU632_RS21825	0.30	-0.6
4,169,871	-		LU632_RS21825	0.30	-1.4
4,170,490	-				+2.6
4,170,490	-				+0.3
4,170,505	+				-1.4
4,170,506	-				+0.0
4,170,507	+				+1.2
4,170,507	+				+2.3
4,170,507	+				+0.2
4,170,508	-				-0.4
4,170,508	-				+0.3
4,170,545	-				-0.3
4,170,558	-				+0.3
4,170,578	-				-1.2
4,170,587	+				-1.2
4,170,599	-				-0.1
4,170,602	+				-0.7
4,170,602	+				+0.8
4,170,700	+		LU632_RS21830	0.12	+0.2
4,170,701	-		LU632_RS21830	0.13	-0.6
4,170,778	+		LU632_RS21830	0.20	-0.3
4,170,778	+		LU632_RS21830	0.20	-2.0
4,170,922	+		LU632_RS21830	0.35	+1.0
4,170,978	-		LU632_RS21830	0.40	+1.6
4,171,037	+		LU632_RS21830	0.46	-1.2
4,171,038	-		LU632_RS21830	0.47	-0.2
4,171,040	-		LU632_RS21830	0.47	-0.5
4,171,040	-		LU632_RS21830	0.47	+0.3
4,171,102	+		LU632_RS21830	0.53	+0.1
4,171,103	-		LU632_RS21830	0.53	+0.3
4,171,103	-		LU632_RS21830	0.53	-1.6
4,171,130	+		LU632_RS21830	0.56	+0.1
4,171,185	+		LU632_RS21830	0.61	-2.5
4,171,186	-		LU632_RS21830	0.61	-0.4
4,171,219	-		LU632_RS21830	0.65	+0.6
4,171,232	+		LU632_RS21830	0.66	+0.2
4,171,232	+		LU632_RS21830	0.66	-0.3
4,171,232	+		LU632_RS21830	0.66	-1.9
4,171,232	+		LU632_RS21830	0.66	+1.1
4,171,232	+		LU632_RS21830	0.66	+0.7
4,171,233	-		LU632_RS21830	0.66	+0.0
4,171,233	-		LU632_RS21830	0.66	+1.3
4,171,235	-		LU632_RS21830	0.66	-0.7
4,171,317	+		LU632_RS21830	0.75	+1.3
4,171,355	+		LU632_RS21830	0.78	+1.2
4,171,428	-		LU632_RS21830	0.86	+1.0
4,171,429	+		LU632_RS21830	0.86	+1.0
4,171,429	+		LU632_RS21830	0.86	+0.2
4,171,430	-		LU632_RS21830	0.86	-1.9
4,171,430	-		LU632_RS21830	0.86	-0.4
4,171,451	+		LU632_RS21830	0.88	+1.2
4,171,452	-		LU632_RS21830	0.88	+2.6
4,171,452	-		LU632_RS21830	0.88	+0.9
4,171,452	-		LU632_RS21830	0.88	+0.2
4,171,452	-		LU632_RS21830	0.88	-0.5
4,171,452	-		LU632_RS21830	0.88	+0.4
4,171,452	-		LU632_RS21830	0.88	-0.6
4,171,453	+		LU632_RS21830	0.88	-2.0
4,171,463	-		LU632_RS21830	0.89	-1.3
4,171,562	+				-0.2
4,171,563	-				+0.5
4,171,563	-				-1.2