Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21665

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,141,518	+	ampH	LU632_RS21660	0.45	-3.3
4,141,518	+	ampH	LU632_RS21660	0.45	+0.0
4,141,561	+	ampH	LU632_RS21660	0.49	-0.3
4,141,753	-	ampH	LU632_RS21660	0.65	+0.9
4,141,753	-	ampH	LU632_RS21660	0.65	-1.2
4,141,777	+	ampH	LU632_RS21660	0.67	+0.3
4,141,790	+	ampH	LU632_RS21660	0.68	+0.5
4,141,790	+	ampH	LU632_RS21660	0.68	-0.2
4,141,807	+	ampH	LU632_RS21660	0.70	-2.0
4,141,808	-	ampH	LU632_RS21660	0.70	+2.2
4,141,828	-	ampH	LU632_RS21660	0.71	+0.8
4,141,944	+	ampH	LU632_RS21660	0.81	-0.7
4,142,130	+				+0.2
4,142,186	+				+0.7
4,142,193	-				-1.0
4,142,195	-				-1.0
4,142,197	+				+1.1
4,142,197	+				-0.1
4,142,197	+				-1.4
4,142,198	-				+1.4
4,142,198	-				+0.9
4,142,207	+				+0.2
4,142,207	+				-0.2
4,142,263	-				-0.9
4,142,264	+				+0.6
4,142,281	+				-1.1
4,142,282	-				-0.1
4,142,282	-				+0.5
4,142,377	-				-2.9
4,142,415	+				-0.4
4,142,416	-				+0.6
4,142,416	-				+0.9
4,142,449	-				-1.0
4,142,599	-				+0.1
4,142,709	+		LU632_RS21665	0.14	-1.0
4,142,919	+		LU632_RS21665	0.28	-2.6
4,142,986	-		LU632_RS21665	0.32	-1.4
4,143,100	+		LU632_RS21665	0.39	-0.5
4,143,166	-		LU632_RS21665	0.44	+0.1
4,143,183	+		LU632_RS21665	0.45	+0.9
4,143,327	+		LU632_RS21665	0.54	+0.9
4,143,328	-		LU632_RS21665	0.54	-2.0
4,143,333	+		LU632_RS21665	0.54	+0.3
4,143,334	-		LU632_RS21665	0.54	-0.6
4,143,396	+		LU632_RS21665	0.58	-1.3
4,143,397	-		LU632_RS21665	0.58	+0.4
4,143,397	-		LU632_RS21665	0.58	+1.6
4,143,419	-		LU632_RS21665	0.60	-0.7
4,143,423	+		LU632_RS21665	0.60	-0.8
4,143,424	-		LU632_RS21665	0.60	-0.3
4,143,560	+		LU632_RS21665	0.69	+1.5
4,143,610	-		LU632_RS21665	0.72	-1.3
4,143,610	-		LU632_RS21665	0.72	-0.6
4,143,629	-		LU632_RS21665	0.73	-1.0
4,143,748	-		LU632_RS21665	0.81	-0.2
4,143,836	+		LU632_RS21665	0.87	+0.6
4,143,842	-		LU632_RS21665	0.87	-1.0
4,143,908	-				-1.2
4,143,967	-				-0.5
4,143,979	+				+0.6
4,143,979	+				+1.0
4,143,979	+				-0.4
4,143,980	-				+1.6
4,143,981	+				+1.4
4,143,982	-				+1.3
4,144,037	-				+0.2
4,144,116	+				+0.9
4,144,164	-				-0.9
4,144,193	-				-1.2
4,144,230	+				-1.4
4,144,280	-				+1.0
4,144,282	+				+0.6
4,144,282	+				-1.9
4,144,282	+				-0.8
4,144,283	-				-0.2
4,144,301	+				-0.4
4,144,434	-				-1.9
4,144,526	+				+0.2
4,144,671	+	opgB	LU632_RS21670	0.15	+0.1
4,144,672	-	opgB	LU632_RS21670	0.15	-2.1
4,144,672	-	opgB	LU632_RS21670	0.15	+0.1
4,144,672	-	opgB	LU632_RS21670	0.15	-1.2
4,144,672	-	opgB	LU632_RS21670	0.15	+0.0
4,144,672	-	opgB	LU632_RS21670	0.15	+0.0
4,144,729	+	opgB	LU632_RS21670	0.18	-0.4
4,144,743	+	opgB	LU632_RS21670	0.18	+1.1
4,144,748	+	opgB	LU632_RS21670	0.18	+0.9
4,144,749	-	opgB	LU632_RS21670	0.19	+0.4
4,144,749	-	opgB	LU632_RS21670	0.19	-0.9
4,144,749	-	opgB	LU632_RS21670	0.19	+0.7
4,144,749	-	opgB	LU632_RS21670	0.19	+1.1
4,144,749	-	opgB	LU632_RS21670	0.19	-0.0
4,144,749	-	opgB	LU632_RS21670	0.19	-0.7
4,144,791	+	opgB	LU632_RS21670	0.20	+0.3
4,144,906	-	opgB	LU632_RS21670	0.25	+1.2
4,144,927	+	opgB	LU632_RS21670	0.26	+0.0
4,145,029	-	opgB	LU632_RS21670	0.31	-0.3