Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20890

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,989,531	-		LU632_RS20880	0.64	-0.5
3,989,546	-		LU632_RS20880	0.67	-1.3
3,989,546	-		LU632_RS20880	0.67	-0.8
3,989,546	-		LU632_RS20880	0.67	-1.1
3,989,549	+		LU632_RS20880	0.67	-0.2
3,989,549	+		LU632_RS20880	0.67	-0.5
3,989,550	-		LU632_RS20880	0.68	+0.2
3,989,671	+		LU632_RS20880	0.88	+0.3
3,989,751	+				-2.3
3,989,752	-				-0.6
3,989,809	-				+1.2
3,990,010	+				+1.2
3,990,013	+				+1.8
3,990,013	+				-2.2
3,990,013	+				+1.8
3,990,112	+				+0.2
3,990,196	+		LU632_RS20885	0.28	-0.0
3,990,196	+		LU632_RS20885	0.28	+0.4
3,990,197	-		LU632_RS20885	0.29	-1.5
3,990,350	+		LU632_RS20885	0.76	+1.1
3,990,394	+				-0.5
3,990,429	+				-0.0
3,990,429	+				-0.3
3,990,429	+				-0.7
3,990,429	+				-0.9
3,990,430	-				+1.5
3,990,430	-				+1.9
3,990,462	+				+0.5
3,990,666	-				+0.2
3,990,821	-	kup	LU632_RS20890	0.17	+1.1
3,990,821	-	kup	LU632_RS20890	0.17	+1.0
3,990,833	+	kup	LU632_RS20890	0.17	-2.0
3,990,842	+	kup	LU632_RS20890	0.18	+0.4
3,990,989	+	kup	LU632_RS20890	0.26	-1.0
3,990,990	-	kup	LU632_RS20890	0.26	+1.8
3,990,990	-	kup	LU632_RS20890	0.26	+0.1
3,991,063	-	kup	LU632_RS20890	0.30	-0.5
3,991,095	+	kup	LU632_RS20890	0.32	-1.5
3,991,095	+	kup	LU632_RS20890	0.32	+1.0
3,991,149	+	kup	LU632_RS20890	0.34	+1.5
3,991,149	+	kup	LU632_RS20890	0.34	-2.6
3,991,182	-	kup	LU632_RS20890	0.36	-0.8
3,991,317	-	kup	LU632_RS20890	0.43	+0.4
3,991,317	-	kup	LU632_RS20890	0.43	-1.1
3,991,363	+	kup	LU632_RS20890	0.46	+0.8
3,991,363	+	kup	LU632_RS20890	0.46	+1.7
3,991,363	+	kup	LU632_RS20890	0.46	-0.6
3,991,364	-	kup	LU632_RS20890	0.46	+1.0
3,991,391	+	kup	LU632_RS20890	0.47	+1.8
3,991,448	+	kup	LU632_RS20890	0.50	+0.5
3,991,451	-	kup	LU632_RS20890	0.51	-0.2
3,991,451	-	kup	LU632_RS20890	0.51	-1.8
3,991,540	-	kup	LU632_RS20890	0.55	+0.3
3,991,540	-	kup	LU632_RS20890	0.55	+3.4
3,991,540	-	kup	LU632_RS20890	0.55	+1.2
3,991,541	+	kup	LU632_RS20890	0.55	+2.0
3,991,543	+	kup	LU632_RS20890	0.56	-0.8
3,991,543	+	kup	LU632_RS20890	0.56	-0.5
3,991,544	+	kup	LU632_RS20890	0.56	-2.0
3,991,544	-	kup	LU632_RS20890	0.56	-0.4
3,991,600	+	kup	LU632_RS20890	0.59	+0.7
3,991,601	-	kup	LU632_RS20890	0.59	+1.3
3,991,601	-	kup	LU632_RS20890	0.59	+0.5
3,991,629	-	kup	LU632_RS20890	0.60	-1.8
3,991,632	+	kup	LU632_RS20890	0.60	-0.4
3,991,632	+	kup	LU632_RS20890	0.60	-0.2
3,991,632	+	kup	LU632_RS20890	0.60	+0.5
3,991,681	+	kup	LU632_RS20890	0.63	-1.3
3,991,714	-	kup	LU632_RS20890	0.65	-0.6
3,991,782	+	kup	LU632_RS20890	0.68	+0.5
3,991,791	+	kup	LU632_RS20890	0.69	-1.0
3,991,791	+	kup	LU632_RS20890	0.69	-0.5
3,991,791	+	kup	LU632_RS20890	0.69	-0.2
3,991,792	-	kup	LU632_RS20890	0.69	+1.9
3,991,792	-	kup	LU632_RS20890	0.69	-0.9
3,991,792	-	kup	LU632_RS20890	0.69	-1.2
3,991,811	+	kup	LU632_RS20890	0.70	-0.8
3,991,811	+	kup	LU632_RS20890	0.70	-0.8
3,991,811	+	kup	LU632_RS20890	0.70	+0.4
3,991,812	-	kup	LU632_RS20890	0.70	+0.5
3,991,910	+	kup	LU632_RS20890	0.75	-0.2
3,991,910	+	kup	LU632_RS20890	0.75	-2.5
3,991,911	-	kup	LU632_RS20890	0.75	-2.4
3,991,950	-	kup	LU632_RS20890	0.77	-0.5
3,992,287	+				-0.0
3,992,287	+				+0.3
3,992,372	+				-0.6
3,992,406	+				+2.1
3,992,462	+				-0.5
3,992,476	+				-0.4
3,992,583	-				-1.0
3,992,583	-				-1.3
3,992,673	+				-0.5
3,992,673	+				-1.2
3,992,700	+				+1.5
3,992,700	+				-0.0
3,992,701	-				+0.5
3,992,701	-				-0.4
3,992,703	+				-0.5
3,992,703	+				+0.2
3,992,703	+				-3.4
3,992,703	+				+0.2
3,992,703	+				-0.7
3,992,704	-				+1.0
3,992,704	-				-1.8
3,992,704	-				-0.0
3,992,734	+				-0.0
3,992,734	+				+1.4
3,992,734	+				-1.0
3,992,735	-				+2.3
3,992,736	+				-0.6
3,992,736	+				-0.0
3,992,745	-				+0.3
3,992,791	-				-0.4
3,992,791	-				-0.2
3,992,899	+		LU632_RS20895	0.16	+1.1
3,992,899	+		LU632_RS20895	0.16	-1.0
3,992,899	+		LU632_RS20895	0.16	-0.4
3,992,900	-		LU632_RS20895	0.16	+0.2
3,992,900	-		LU632_RS20895	0.16	-2.3
3,992,901	+		LU632_RS20895	0.16	+0.4
3,992,908	+		LU632_RS20895	0.16	-2.2
3,992,909	-		LU632_RS20895	0.16	-1.4
3,992,991	+		LU632_RS20895	0.22	+0.4
3,993,007	+		LU632_RS20895	0.23	-1.6
3,993,028	+		LU632_RS20895	0.25	-1.7
3,993,028	+		LU632_RS20895	0.25	-0.2
3,993,028	+		LU632_RS20895	0.25	-0.5
3,993,029	-		LU632_RS20895	0.25	-0.1
3,993,029	-		LU632_RS20895	0.25	-0.4
3,993,029	-		LU632_RS20895	0.25	-0.5
3,993,073	-		LU632_RS20895	0.28	+0.7