Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20780

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS20770 and LU632_RS20775 are separated by 52 nucleotidesLU632_RS20775 and LU632_RS20780 are separated by 97 nucleotidesLU632_RS20780 and LU632_RS20785 are separated by 9 nucleotides LU632_RS20770: LU632_RS20770 - cell wall-binding protein, at 3,965,145 to 3,965,459 _RS20770 LU632_RS20775: LU632_RS20775 - membrane protein, at 3,965,512 to 3,965,937 _RS20775 LU632_RS20780: LU632_RS20780 - hypothetical protein, at 3,966,035 to 3,966,433 _RS20780 LU632_RS20785: LU632_RS20785 - hypothetical protein, at 3,966,443 to 3,968,047 _RS20785 Position (kb) 3966 3967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3965.466 kb on - strandat 3965.868 kb on + strand, within LU632_RS20775at 3966.086 kb on - strand, within LU632_RS20780at 3966.676 kb on + strand, within LU632_RS20785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
remove
3,965,466 - -1.7
3,965,868 + LU632_RS20775 0.84 -0.2
3,966,086 - LU632_RS20780 0.13 -2.7
3,966,676 + LU632_RS20785 0.15 +3.0

Or see this region's nucleotide sequence