Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20615

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,927,462	-	yqiA	LU632_RS20615	0.11	-0.5
3,927,462	-	yqiA	LU632_RS20615	0.11	+0.8
3,927,462	-	yqiA	LU632_RS20615	0.11	-1.5
3,927,462	-	yqiA	LU632_RS20615	0.11	-0.0
3,927,510	-	yqiA	LU632_RS20615	0.19	-0.0
3,927,510	-	yqiA	LU632_RS20615	0.19	+1.1
3,927,557	-	yqiA	LU632_RS20615	0.27	-0.0
3,927,615	-	yqiA	LU632_RS20615	0.37	+0.1
3,927,638	+	yqiA	LU632_RS20615	0.41	-1.5
3,927,638	+	yqiA	LU632_RS20615	0.41	+1.8
3,927,639	-	yqiA	LU632_RS20615	0.41	-0.2
3,927,639	-	yqiA	LU632_RS20615	0.41	-0.3
3,927,639	-	yqiA	LU632_RS20615	0.41	-0.1
3,927,639	-	yqiA	LU632_RS20615	0.41	+1.9
3,927,688	+	yqiA	LU632_RS20615	0.49	+0.7
3,927,736	-	yqiA	LU632_RS20615	0.58	+0.5
3,927,761	+	yqiA	LU632_RS20615	0.62	+0.2
3,927,761	+	yqiA	LU632_RS20615	0.62	-1.5
3,927,761	+	yqiA	LU632_RS20615	0.62	+1.5
3,927,762	-	yqiA	LU632_RS20615	0.62	-1.6
3,927,875	+	yqiA	LU632_RS20615	0.82	-0.3
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.6
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.5
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.7
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.3
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.4
3,927,876	-	yqiA	LU632_RS20615	0.82	-1.5
3,927,876	-	yqiA	LU632_RS20615	0.82	+3.1
3,927,876	-	yqiA	LU632_RS20615	0.82	-0.7
3,927,876	-	yqiA	LU632_RS20615	0.82	+0.3
3,927,949	-				-0.0
3,927,966	-				+0.1
3,927,986	+				-0.1
3,928,203	+	cpdA	LU632_RS20620	0.26	+4.9
3,928,243	+	cpdA	LU632_RS20620	0.31	+5.3
3,928,246	+	cpdA	LU632_RS20620	0.32	+6.3
3,928,246	+	cpdA	LU632_RS20620	0.32	+4.9
3,928,247	-	cpdA	LU632_RS20620	0.32	+5.5
3,928,296	+	cpdA	LU632_RS20620	0.38	+6.3
3,928,324	+	cpdA	LU632_RS20620	0.41	+5.5
3,928,366	-	cpdA	LU632_RS20620	0.46	+5.8
3,928,464	+	cpdA	LU632_RS20620	0.58	+5.1
3,928,464	+	cpdA	LU632_RS20620	0.58	+4.7
3,928,464	+	cpdA	LU632_RS20620	0.58	+5.7
3,928,465	-	cpdA	LU632_RS20620	0.58	+4.0
3,928,485	+	cpdA	LU632_RS20620	0.60	+5.4
3,928,485	+	cpdA	LU632_RS20620	0.60	+4.9
3,928,486	-	cpdA	LU632_RS20620	0.61	+6.2
3,928,486	-	cpdA	LU632_RS20620	0.61	+5.0
3,928,503	+	cpdA	LU632_RS20620	0.63	+4.2
3,928,640	-	cpdA	LU632_RS20620	0.79	+4.3
3,928,702	-	cpdA	LU632_RS20620	0.87	+6.9
3,928,706	-	cpdA	LU632_RS20620	0.87	+4.2
3,928,759	+				+4.5
3,928,760	-				+4.9
3,928,918	+		LU632_RS20625	0.14	+5.4
3,928,918	+		LU632_RS20625	0.14	+6.0
3,928,967	+		LU632_RS20625	0.25	+4.3