Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20540

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,909,331	+		LU632_RS20530	0.77	-0.8
3,909,348	+		LU632_RS20530	0.79	-0.5
3,909,357	+		LU632_RS20530	0.79	+0.2
3,909,357	+		LU632_RS20530	0.79	+5.1
3,909,433	-		LU632_RS20530	0.85	+0.4
3,909,433	-		LU632_RS20530	0.85	-0.4
3,909,464	+		LU632_RS20530	0.88	+0.8
3,909,473	+		LU632_RS20530	0.88	+3.2
3,909,495	-				+0.8
3,909,506	+				-1.0
3,909,544	+				+0.8
3,909,545	-				+0.4
3,909,686	+				+0.3
3,909,715	-				+2.5
3,909,756	-				+1.3
3,909,792	-				+0.4
3,910,069	+	exbD	LU632_RS20535	0.42	-0.4
3,910,070	-	exbD	LU632_RS20535	0.43	-0.6
3,910,085	+	exbD	LU632_RS20535	0.46	-1.4
3,910,088	-	exbD	LU632_RS20535	0.47	-0.9
3,910,119	+	exbD	LU632_RS20535	0.54	+1.3
3,910,120	-	exbD	LU632_RS20535	0.54	-0.9
3,910,120	-	exbD	LU632_RS20535	0.54	-1.3
3,910,120	-	exbD	LU632_RS20535	0.54	-1.9
3,910,121	+	exbD	LU632_RS20535	0.55	+0.6
3,910,121	+	exbD	LU632_RS20535	0.55	+1.6
3,910,121	+	exbD	LU632_RS20535	0.55	-0.6
3,910,122	-	exbD	LU632_RS20535	0.55	+0.6
3,910,122	-	exbD	LU632_RS20535	0.55	+0.9
3,910,211	-	exbD	LU632_RS20535	0.76	-0.4
3,910,217	-	exbD	LU632_RS20535	0.77	+1.1
3,910,223	+	exbD	LU632_RS20535	0.79	+0.9
3,910,224	-	exbD	LU632_RS20535	0.79	-1.4
3,910,298	+				-2.4
3,910,299	-				+2.3
3,910,362	+				+0.9
3,910,363	-				-0.7
3,910,469	+	exbB	LU632_RS20540	0.21	+2.4
3,910,470	-	exbB	LU632_RS20540	0.21	-1.7
3,910,486	+	exbB	LU632_RS20540	0.23	+0.1
3,910,579	-	exbB	LU632_RS20540	0.36	-1.7
3,910,606	+	exbB	LU632_RS20540	0.39	+0.9
3,911,006	+				-0.6
3,911,006	+				+0.1
3,911,006	+				+0.8
3,911,007	-				+3.7
3,911,007	-				+0.1
3,911,207	+				+1.0
3,911,207	+				+0.1
3,911,447	-	metC	LU632_RS20545	0.13	-1.0
3,911,451	+	metC	LU632_RS20545	0.14	-1.9
3,911,451	+	metC	LU632_RS20545	0.14	-1.8
3,911,615	-	metC	LU632_RS20545	0.27	-0.9
3,911,650	+	metC	LU632_RS20545	0.30	-1.3
3,911,881	-	metC	LU632_RS20545	0.50	-1.0
3,911,891	+	metC	LU632_RS20545	0.50	-0.2
3,911,891	+	metC	LU632_RS20545	0.50	-0.6
3,911,891	+	metC	LU632_RS20545	0.50	-0.5
3,911,912	+	metC	LU632_RS20545	0.52	-1.9
3,911,912	+	metC	LU632_RS20545	0.52	-0.7
3,911,984	-	metC	LU632_RS20545	0.58	-2.3
3,911,997	+	metC	LU632_RS20545	0.59	+0.3
3,911,997	+	metC	LU632_RS20545	0.59	-1.5
3,911,998	-	metC	LU632_RS20545	0.59	-2.1
3,912,003	-	metC	LU632_RS20545	0.60	-1.0
3,912,033	+	metC	LU632_RS20545	0.62	-1.4
3,912,033	+	metC	LU632_RS20545	0.62	-2.5
3,912,033	+	metC	LU632_RS20545	0.62	-0.7
3,912,034	-	metC	LU632_RS20545	0.62	-0.0
3,912,034	-	metC	LU632_RS20545	0.62	-1.4
3,912,034	-	metC	LU632_RS20545	0.62	-1.0