Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19620

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,720,513	+	argC	LU632_RS19615	0.21	-0.1
3,720,513	+	argC	LU632_RS19615	0.21	-2.1
3,720,514	-	argC	LU632_RS19615	0.21	-1.3
3,720,536	+	argC	LU632_RS19615	0.24	-4.0
3,720,537	-	argC	LU632_RS19615	0.24	-4.0
3,720,553	+	argC	LU632_RS19615	0.25	-1.4
3,720,635	-	argC	LU632_RS19615	0.33	-1.2
3,720,635	-	argC	LU632_RS19615	0.33	-1.6
3,720,719	-	argC	LU632_RS19615	0.42	+0.5
3,720,719	-	argC	LU632_RS19615	0.42	-0.5
3,720,906	+	argC	LU632_RS19615	0.60	-2.2
3,720,951	+	argC	LU632_RS19615	0.65	-1.8
3,720,952	-	argC	LU632_RS19615	0.65	-1.7
3,720,954	+	argC	LU632_RS19615	0.65	-1.3
3,720,954	+	argC	LU632_RS19615	0.65	-1.1
3,720,955	-	argC	LU632_RS19615	0.65	-2.4
3,720,955	-	argC	LU632_RS19615	0.65	-0.9
3,720,955	-	argC	LU632_RS19615	0.65	+0.1
3,720,961	+	argC	LU632_RS19615	0.66	+1.2
3,721,007	+	argC	LU632_RS19615	0.70	+0.4
3,721,246	-				-0.1
3,721,319	-				-0.3
3,721,521	-				-3.2
3,721,854	-	argE	LU632_RS19620	0.31	+1.5
3,721,859	-	argE	LU632_RS19620	0.31	+0.8
3,721,886	+	argE	LU632_RS19620	0.34	-1.6
3,721,905	+	argE	LU632_RS19620	0.35	-1.0
3,721,906	-	argE	LU632_RS19620	0.36	-1.6
3,721,906	-	argE	LU632_RS19620	0.36	-1.6
3,721,906	-	argE	LU632_RS19620	0.36	-1.9
3,721,906	-	argE	LU632_RS19620	0.36	-1.3
3,722,146	+	argE	LU632_RS19620	0.56	-1.3
3,722,226	-	argE	LU632_RS19620	0.63	-1.6
3,722,274	+	argE	LU632_RS19620	0.67	-0.5
3,722,274	+	argE	LU632_RS19620	0.67	-2.3
3,722,274	+	argE	LU632_RS19620	0.67	-2.2
3,722,275	-	argE	LU632_RS19620	0.68	-0.5
3,722,275	-	argE	LU632_RS19620	0.68	-1.9
3,722,275	-	argE	LU632_RS19620	0.68	-1.9
3,722,275	-	argE	LU632_RS19620	0.68	-0.1
3,722,484	+	argE	LU632_RS19620	0.86	-2.5
3,722,574	+				-3.5
3,722,575	-				-2.6
3,722,576	+				-0.1
3,722,577	-				-3.0
3,722,779	+				-0.8
3,722,780	-				-2.5
3,722,826	+				-0.5
3,722,855	+				-0.3
3,722,856	-				+0.0
3,722,859	-				-0.2
3,722,859	-				-0.7
3,722,906	+				+1.6
3,722,909	-				+0.3
3,722,909	-				-3.3
3,722,928	+				+1.6
3,722,968	-				+0.5
3,722,978	+				-0.3
3,723,044	-				+2.6
3,723,124	+				-0.9
3,723,131	-				+0.4
3,723,259	+				+0.6
3,723,275	+				-1.1
3,723,283	+	ppc	LU632_RS19625	0.10	+1.9
3,723,283	+	ppc	LU632_RS19625	0.10	-1.8
3,723,284	-	ppc	LU632_RS19625	0.10	-1.3
3,723,284	-	ppc	LU632_RS19625	0.10	-1.5
3,723,284	-	ppc	LU632_RS19625	0.10	-0.4
3,723,284	-	ppc	LU632_RS19625	0.10	+0.9
3,723,461	-	ppc	LU632_RS19625	0.17	+1.5
3,723,593	+	ppc	LU632_RS19625	0.22	+0.0
3,723,593	+	ppc	LU632_RS19625	0.22	+0.1
3,723,593	+	ppc	LU632_RS19625	0.22	+0.1