Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19350

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS19340 and LU632_RS19345 are separated by 32 nucleotidesLU632_RS19345 and LU632_RS19350 are separated by 1 nucleotidesLU632_RS19350 and LU632_RS19355 are separated by 301 nucleotides LU632_RS19340: LU632_RS19340 - phage tail tape measure protein, at 3,656,812 to 3,659,297 _RS19340 LU632_RS19345: LU632_RS19345 - hypothetical protein, at 3,659,330 to 3,659,923 _RS19345 LU632_RS19350: LU632_RS19350 - hypothetical protein, at 3,659,925 to 3,660,239 _RS19350 LU632_RS19355: LU632_RS19355 - regulator of pectin lyase production, at 3,660,541 to 3,661,068 _RS19355 Position (kb) 3659 3660 3661Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3658.946 kb on - strand, within LU632_RS19340at 3659.494 kb on + strand, within LU632_RS19345at 3659.747 kb on - strand, within LU632_RS19345at 3659.749 kb on - strand, within LU632_RS19345at 3659.769 kb on + strand, within LU632_RS19345at 3659.799 kb on - strand, within LU632_RS19345at 3659.808 kb on - strand, within LU632_RS19345at 3659.818 kb on + strand, within LU632_RS19345at 3659.875 kb on + strandat 3660.004 kb on - strand, within LU632_RS19350at 3660.007 kb on - strand, within LU632_RS19350at 3660.108 kb on + strand, within LU632_RS19350at 3660.179 kb on - strand, within LU632_RS19350at 3660.222 kb on - strandat 3660.223 kb on + strandat 3660.224 kb on - strandat 3660.480 kb on - strandat 3660.531 kb on - strandat 3660.531 kb on - strandat 3660.540 kb on - strandat 3660.608 kb on + strand, within LU632_RS19355at 3660.640 kb on - strand, within LU632_RS19355at 3660.654 kb on + strand, within LU632_RS19355at 3660.655 kb on - strand, within LU632_RS19355at 3660.723 kb on + strand, within LU632_RS19355at 3660.723 kb on + strand, within LU632_RS19355at 3660.729 kb on + strand, within LU632_RS19355at 3660.729 kb on + strand, within LU632_RS19355at 3660.730 kb on - strand, within LU632_RS19355at 3660.731 kb on + strand, within LU632_RS19355at 3660.731 kb on + strand, within LU632_RS19355at 3660.732 kb on - strand, within LU632_RS19355at 3660.732 kb on - strand, within LU632_RS19355at 3660.732 kb on - strand, within LU632_RS19355at 3660.732 kb on - strand, within LU632_RS19355at 3660.734 kb on - strand, within LU632_RS19355at 3660.734 kb on - strand, within LU632_RS19355at 3660.735 kb on + strand, within LU632_RS19355at 3660.735 kb on + strand, within LU632_RS19355at 3660.735 kb on + strand, within LU632_RS19355at 3660.736 kb on - strand, within LU632_RS19355at 3660.809 kb on + strand, within LU632_RS19355at 3660.815 kb on - strand, within LU632_RS19355at 3660.837 kb on + strand, within LU632_RS19355at 3660.900 kb on + strand, within LU632_RS19355at 3660.901 kb on - strand, within LU632_RS19355at 3660.901 kb on - strand, within LU632_RS19355at 3660.903 kb on - strand, within LU632_RS19355at 3660.903 kb on - strand, within LU632_RS19355at 3660.903 kb on - strand, within LU632_RS19355at 3660.946 kb on - strand, within LU632_RS19355at 3661.047 kb on - strandat 3661.047 kb on - strandat 3661.062 kb on + strandat 3661.062 kb on + strandat 3661.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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3,658,946 - LU632_RS19340 0.86 +1.5
3,659,494 + LU632_RS19345 0.28 +1.1
3,659,747 - LU632_RS19345 0.70 -0.2
3,659,749 - LU632_RS19345 0.71 +1.1
3,659,769 + LU632_RS19345 0.74 +0.7
3,659,799 - LU632_RS19345 0.79 +0.2
3,659,808 - LU632_RS19345 0.80 -0.3
3,659,818 + LU632_RS19345 0.82 -0.4
3,659,875 + +0.4
3,660,004 - LU632_RS19350 0.25 +4.6
3,660,007 - LU632_RS19350 0.26 +0.9
3,660,108 + LU632_RS19350 0.58 +0.3
3,660,179 - LU632_RS19350 0.81 +0.4
3,660,222 - -1.3
3,660,223 + -0.6
3,660,224 - -0.1
3,660,480 - +0.7
3,660,531 - +3.8
3,660,531 - +0.1
3,660,540 - -0.8
3,660,608 + LU632_RS19355 0.13 -0.4
3,660,640 - LU632_RS19355 0.19 -0.1
3,660,654 + LU632_RS19355 0.21 +0.3
3,660,655 - LU632_RS19355 0.22 -0.4
3,660,723 + LU632_RS19355 0.34 -1.8
3,660,723 + LU632_RS19355 0.34 +0.2
3,660,729 + LU632_RS19355 0.36 -1.9
3,660,729 + LU632_RS19355 0.36 -0.2
3,660,730 - LU632_RS19355 0.36 -2.3
3,660,731 + LU632_RS19355 0.36 +0.7
3,660,731 + LU632_RS19355 0.36 -0.3
3,660,732 - LU632_RS19355 0.36 -0.2
3,660,732 - LU632_RS19355 0.36 +0.0
3,660,732 - LU632_RS19355 0.36 -0.6
3,660,732 - LU632_RS19355 0.36 -0.3
3,660,734 - LU632_RS19355 0.37 -0.0
3,660,734 - LU632_RS19355 0.37 +1.1
3,660,735 + LU632_RS19355 0.37 -0.2
3,660,735 + LU632_RS19355 0.37 +0.8
3,660,735 + LU632_RS19355 0.37 -1.3
3,660,736 - LU632_RS19355 0.37 +0.4
3,660,809 + LU632_RS19355 0.51 -3.0
3,660,815 - LU632_RS19355 0.52 +0.3
3,660,837 + LU632_RS19355 0.56 -0.3
3,660,900 + LU632_RS19355 0.68 -1.3
3,660,901 - LU632_RS19355 0.68 -2.6
3,660,901 - LU632_RS19355 0.68 -1.6
3,660,903 - LU632_RS19355 0.69 -0.3
3,660,903 - LU632_RS19355 0.69 -0.8
3,660,903 - LU632_RS19355 0.69 -0.3
3,660,946 - LU632_RS19355 0.77 -0.5
3,661,047 - +0.2
3,661,047 - +0.8
3,661,062 + -0.2
3,661,062 + +0.7
3,661,123 - -2.8

Or see this region's nucleotide sequence