Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19150

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,618,979	-				+1.0
3,618,987	+				-0.2
3,619,105	+				-0.1
3,619,105	+				-0.8
3,619,164	+				+0.4
3,619,213	+				-0.1
3,619,224	+				+0.7
3,619,375	+		LU632_RS19145	0.34	+0.5
3,619,375	+		LU632_RS19145	0.34	+0.6
3,619,376	-		LU632_RS19145	0.34	+0.5
3,619,376	-		LU632_RS19145	0.34	-0.5
3,619,377	+		LU632_RS19145	0.34	-0.1
3,619,410	-		LU632_RS19145	0.42	+0.5
3,619,532	+		LU632_RS19145	0.69	+0.8
3,619,533	-		LU632_RS19145	0.69	+2.7
3,619,575	-		LU632_RS19145	0.79	-2.7
3,619,575	-		LU632_RS19145	0.79	-0.7
3,619,670	+				+0.5
3,619,670	+				+0.2
3,619,670	+				+0.3
3,619,674	+				-1.5
3,619,674	+				-1.1
3,619,718	-				+0.9
3,619,724	-				+0.9
3,619,761	+				+0.7
3,619,787	+				-0.1
3,619,787	+				+1.2
3,619,787	+				-0.4
3,619,788	-				-2.2
3,619,788	-				+1.3
3,619,788	-				+1.8
3,619,788	-				+0.9
3,619,788	-				-0.5
3,619,803	-				-0.5
3,619,803	-				-0.3
3,619,806	+				-0.1
3,619,806	+				-0.3
3,619,806	+				-1.4
3,619,807	-				-0.8
3,619,848	+				-1.0
3,619,900	-				-0.1
3,619,900	-				+0.2
3,619,907	-				-0.2
3,619,954	+				-1.3
3,619,954	+				-0.1
3,619,975	+				+0.5
3,619,975	+				+2.4
3,619,975	+				+0.3
3,619,975	+				-0.8
3,619,975	+				-0.1
3,619,975	+				-1.1
3,619,975	+				-1.3
3,619,975	+				+2.5
3,620,007	-		LU632_RS19150	0.12	-0.0
3,620,343	-		LU632_RS19150	0.84	-1.1
3,620,431	+				-0.2
3,620,438	-				-0.5
3,620,533	+				+0.2
3,620,606	+				-0.8
3,620,619	+				+0.6
3,620,620	-				+0.9
3,620,620	-				+0.7
3,620,622	-				+0.1
3,620,622	-				+0.7
3,620,768	+				-1.9
3,620,796	+				-0.1
3,620,845	+		LU632_RS19155	0.12	-1.0
3,620,934	+		LU632_RS19155	0.25	-1.5
3,620,956	+		LU632_RS19155	0.28	+0.6
3,620,956	+		LU632_RS19155	0.28	+0.0
3,620,957	-		LU632_RS19155	0.29	+0.3
3,620,957	-		LU632_RS19155	0.29	-0.5
3,621,033	+		LU632_RS19155	0.40	-2.4
3,621,034	-		LU632_RS19155	0.40	-1.2
3,621,320	+		LU632_RS19155	0.81	-1.3
3,621,402	-				+0.4