Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19020

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,590,390	+				-1.2
3,590,430	+				+1.1
3,590,478	-				-0.5
3,590,499	+				+1.1
3,590,500	-				-0.9
3,590,616	+		LU632_RS19010	0.48	+0.6
3,590,627	-		LU632_RS19010	0.53	+0.1
3,590,670	+		LU632_RS19010	0.73	-1.5
3,590,728	-				-0.9
3,590,798	+				+0.7
3,590,983	+	cspA	LU632_RS19015	0.87	+1.8
3,590,984	-	cspA	LU632_RS19015	0.88	+0.7
3,591,030	-				+0.3
3,591,074	-				-1.5
3,591,085	-				-1.1
3,591,119	-				+1.1
3,591,160	-				+0.0
3,591,212	+				+0.0
3,591,212	+				-0.6
3,591,225	+				-1.7
3,591,242	-				+0.2
3,591,248	+				+0.4
3,591,257	-				+0.9
3,591,257	-				-0.6
3,591,269	-				+0.5
3,591,295	+				+1.3
3,591,295	+				-2.4
3,591,296	-				+1.5
3,591,345	+				-0.5
3,591,345	-				+1.1
3,591,440	+		LU632_RS19020	0.15	-0.8
3,591,440	+		LU632_RS19020	0.15	+1.8
3,591,447	+		LU632_RS19020	0.16	+0.6
3,591,448	-		LU632_RS19020	0.16	-0.0
3,591,516	+		LU632_RS19020	0.26	+1.5
3,591,656	+		LU632_RS19020	0.47	-1.7
3,591,656	+		LU632_RS19020	0.47	+0.4
3,591,656	+		LU632_RS19020	0.47	+1.5
3,591,656	+		LU632_RS19020	0.47	+2.8
3,591,656	+		LU632_RS19020	0.47	+0.9
3,591,657	-		LU632_RS19020	0.47	+2.1
3,591,782	+		LU632_RS19020	0.66	-0.5
3,591,962	+				+0.1
3,591,963	-				-0.1
3,592,135	+				+2.0
3,592,135	+				+0.6
3,592,192	+				-0.4
3,592,192	+				-0.7
3,592,192	+				+0.2
3,592,193	-				-1.5
3,592,193	-				+2.1
3,592,198	-				+1.5
3,592,278	-				+0.7
3,592,278	-				-0.8
3,592,532	+				-1.1
3,592,533	-				-1.7
3,592,533	-				-0.0
3,592,545	-				-0.9
3,592,545	-				-2.6
3,592,545	-				+0.2
3,592,735	+		LU632_RS19030	0.54	-0.7
3,592,736	-		LU632_RS19030	0.54	+0.5
3,592,796	+		LU632_RS19030	0.75	+0.8
3,592,796	+		LU632_RS19030	0.75	+0.1
3,592,797	-		LU632_RS19030	0.75	-0.6
3,592,797	-		LU632_RS19030	0.75	+2.5
3,592,797	-		LU632_RS19030	0.75	+0.3
3,592,822	-		LU632_RS19030	0.84	+1.7
3,592,822	-		LU632_RS19030	0.84	+0.3
3,592,827	-		LU632_RS19030	0.86	-0.1
3,592,830	+		LU632_RS19030	0.87	+1.1
3,592,831	-		LU632_RS19030	0.87	-0.4
3,592,831	-		LU632_RS19030	0.87	+0.3
3,592,882	-				-0.7
3,592,949	-				-0.1
3,592,996	+				-0.5
3,592,996	+				-0.6
3,592,997	-				-0.4