Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18930

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,570,827	-				+0.2
3,570,925	-	phoB	LU632_RS18925	0.12	-0.5
3,570,939	+	phoB	LU632_RS18925	0.14	+0.1
3,570,940	-	phoB	LU632_RS18925	0.14	-0.2
3,570,968	+	phoB	LU632_RS18925	0.18	-1.3
3,570,985	+	phoB	LU632_RS18925	0.20	+0.5
3,570,986	-	phoB	LU632_RS18925	0.21	-0.5
3,570,986	-	phoB	LU632_RS18925	0.21	-0.7
3,570,986	-	phoB	LU632_RS18925	0.21	+1.1
3,570,993	+	phoB	LU632_RS18925	0.22	-0.4
3,571,013	+	phoB	LU632_RS18925	0.24	-0.6
3,571,013	+	phoB	LU632_RS18925	0.24	+0.7
3,571,014	-	phoB	LU632_RS18925	0.25	+0.1
3,571,053	+	phoB	LU632_RS18925	0.30	-0.9
3,571,053	+	phoB	LU632_RS18925	0.30	-0.3
3,571,054	-	phoB	LU632_RS18925	0.30	+0.5
3,571,054	-	phoB	LU632_RS18925	0.30	+1.2
3,571,055	+	phoB	LU632_RS18925	0.31	-0.1
3,571,056	-	phoB	LU632_RS18925	0.31	+0.8
3,571,056	-	phoB	LU632_RS18925	0.31	+0.4
3,571,168	-	phoB	LU632_RS18925	0.47	+0.5
3,571,221	+	phoB	LU632_RS18925	0.55	-0.1
3,571,221	+	phoB	LU632_RS18925	0.55	+0.6
3,571,229	+	phoB	LU632_RS18925	0.56	-0.8
3,571,229	+	phoB	LU632_RS18925	0.56	-0.9
3,571,229	+	phoB	LU632_RS18925	0.56	+1.8
3,571,230	-	phoB	LU632_RS18925	0.56	-0.3
3,571,230	-	phoB	LU632_RS18925	0.56	+0.5
3,571,305	+	phoB	LU632_RS18925	0.67	+1.6
3,571,338	+	phoB	LU632_RS18925	0.72	-0.1
3,571,338	+	phoB	LU632_RS18925	0.72	-1.1
3,571,338	+	phoB	LU632_RS18925	0.72	+0.9
3,571,521	+				+0.2
3,571,535	-				+1.1
3,571,583	+				+1.6
3,571,584	-				-1.7
3,571,698	+				-0.3
3,571,699	-				-0.1
3,571,781	+				+1.0
3,571,905	+	sbcD	LU632_RS18930	0.14	+0.5
3,572,080	+	sbcD	LU632_RS18930	0.28	-1.1
3,572,080	+	sbcD	LU632_RS18930	0.28	+0.7
3,572,081	-	sbcD	LU632_RS18930	0.28	-0.9
3,572,081	-	sbcD	LU632_RS18930	0.28	+1.7
3,572,157	-	sbcD	LU632_RS18930	0.35	+0.1
3,572,160	-	sbcD	LU632_RS18930	0.35	+4.0
3,572,226	+	sbcD	LU632_RS18930	0.40	-0.3
3,572,349	+	sbcD	LU632_RS18930	0.50	+0.5
3,572,350	-	sbcD	LU632_RS18930	0.50	-0.5
3,572,350	-	sbcD	LU632_RS18930	0.50	+1.7
3,572,417	+	sbcD	LU632_RS18930	0.56	-1.9
3,572,418	-	sbcD	LU632_RS18930	0.56	+1.9
3,572,454	-	sbcD	LU632_RS18930	0.59	-1.9
3,572,454	-	sbcD	LU632_RS18930	0.59	+0.0
3,572,752	-	sbcD	LU632_RS18930	0.83	+0.8
3,572,810	+	sbcD	LU632_RS18930	0.88	+0.8
3,573,100	+				+1.0
3,573,117	-				-2.0
3,573,117	-				-0.5
3,573,214	-				+0.2
3,573,326	-		LU632_RS18935	0.10	-0.7
3,573,339	+		LU632_RS18935	0.10	+0.5
3,573,339	+		LU632_RS18935	0.10	+0.4
3,573,340	-		LU632_RS18935	0.11	-0.2
3,573,497	+		LU632_RS18935	0.15	-0.9
3,573,497	+		LU632_RS18935	0.15	-0.5
3,573,497	+		LU632_RS18935	0.15	+0.9
3,573,497	+		LU632_RS18935	0.15	+4.0
3,573,498	-		LU632_RS18935	0.15	-0.9
3,573,498	-		LU632_RS18935	0.15	+1.9
3,573,498	-		LU632_RS18935	0.15	-0.3
3,573,498	-		LU632_RS18935	0.15	-0.7
3,573,498	-		LU632_RS18935	0.15	+0.5
3,573,782	-		LU632_RS18935	0.23	-1.0
3,573,859	+		LU632_RS18935	0.25	-0.3
3,573,860	-		LU632_RS18935	0.25	+1.0