Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18885

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,561,330	+				-2.3
3,561,353	+				+1.4
3,561,395	-				+0.3
3,561,395	-				+0.4
3,561,430	+				+0.4
3,561,431	-				+0.1
3,561,431	-				-1.2
3,561,458	+				-0.5
3,561,458	+				-0.2
3,561,459	+				-0.2
3,561,460	+				+0.9
3,561,460	+				-0.3
3,561,460	+				+1.1
3,561,483	+				-1.5
3,561,483	+				-2.4
3,561,483	+				+0.9
3,561,484	-				+1.5
3,561,484	-				+0.1
3,561,690	-		LU632_RS18880	0.35	+0.4
3,561,844	-		LU632_RS18880	0.67	+3.3
3,562,043	+				-0.1
3,562,043	+				-1.8
3,562,043	+				-1.6
3,562,043	+				-0.6
3,562,043	+				-0.3
3,562,044	-				-1.1
3,562,071	+				+0.6
3,562,074	-				+0.1
3,562,080	+				+0.2
3,562,116	-				+2.4
3,562,134	+				+0.0
3,562,135	-				+0.4
3,562,159	+				-1.0
3,562,159	+				-1.3
3,562,160	-				+0.2
3,562,160	-				+1.4
3,562,215	+				+0.2
3,562,216	-				+0.4
3,562,249	+				+0.4
3,562,250	-				-0.1
3,562,250	-				+0.6
3,562,282	+				-0.5
3,562,540	+	proY	LU632_RS18885	0.18	+3.7
3,562,541	-	proY	LU632_RS18885	0.18	-0.0
3,562,541	-	proY	LU632_RS18885	0.18	-0.9
3,562,612	+	proY	LU632_RS18885	0.23	-2.9
3,562,612	-	proY	LU632_RS18885	0.23	+1.7
3,562,738	+	proY	LU632_RS18885	0.32	+1.4
3,562,738	+	proY	LU632_RS18885	0.32	-0.0
3,562,739	-	proY	LU632_RS18885	0.32	-0.1
3,562,754	+	proY	LU632_RS18885	0.33	-1.1
3,562,832	-	proY	LU632_RS18885	0.39	+0.4
3,562,887	+	proY	LU632_RS18885	0.43	+0.7
3,562,898	-	proY	LU632_RS18885	0.44	-0.6
3,562,920	+	proY	LU632_RS18885	0.46	+2.5
3,562,952	-	proY	LU632_RS18885	0.48	-0.9
3,563,252	-	proY	LU632_RS18885	0.70	-0.1
3,563,261	-	proY	LU632_RS18885	0.71	+1.8
3,563,261	-	proY	LU632_RS18885	0.71	+2.4
3,563,322	+	proY	LU632_RS18885	0.75	-1.0
3,563,323	-	proY	LU632_RS18885	0.75	-0.7
3,563,377	-	proY	LU632_RS18885	0.79	-0.1
3,563,392	+	proY	LU632_RS18885	0.80	-1.1
3,563,392	+	proY	LU632_RS18885	0.80	-0.1
3,563,392	+	proY	LU632_RS18885	0.80	-0.6
3,563,392	+	proY	LU632_RS18885	0.80	+0.9
3,563,392	+	proY	LU632_RS18885	0.80	-2.2
3,563,392	+	proY	LU632_RS18885	0.80	-0.9
3,563,394	+	proY	LU632_RS18885	0.81	+3.4
3,563,416	-	proY	LU632_RS18885	0.82	-0.1
3,563,488	+	proY	LU632_RS18885	0.88	+0.3
3,563,494	-	proY	LU632_RS18885	0.88	-0.2
3,563,515	+	proY	LU632_RS18885	0.90	+0.7
3,563,515	+	proY	LU632_RS18885	0.90	-0.7
3,563,568	+				+0.1
3,563,628	-				+1.9
3,563,708	-				-1.6
3,563,716	+				-2.8
3,563,765	-				-0.8
3,563,779	-				+0.0
3,563,784	+				-1.4
3,563,786	+				+0.9
3,563,786	+				+1.1
3,563,787	-				-1.4
3,563,787	-				+0.1
3,563,787	-				-0.5
3,563,787	-				+2.5
3,563,787	-				+0.5
3,564,115	+	brnQ	LU632_RS18890	0.29	+0.9
3,564,116	-	brnQ	LU632_RS18890	0.29	+0.1
3,564,168	-	brnQ	LU632_RS18890	0.33	-1.2
3,564,168	-	brnQ	LU632_RS18890	0.33	+1.8
3,564,299	+	brnQ	LU632_RS18890	0.43	-0.3
3,564,299	+	brnQ	LU632_RS18890	0.43	+1.9
3,564,313	+	brnQ	LU632_RS18890	0.44	+0.1
3,564,407	+	brnQ	LU632_RS18890	0.51	-0.4
3,564,408	-	brnQ	LU632_RS18890	0.51	-0.9
3,564,408	-	brnQ	LU632_RS18890	0.51	-1.5
3,564,410	+	brnQ	LU632_RS18890	0.51	-0.7
3,564,410	+	brnQ	LU632_RS18890	0.51	-0.2
3,564,416	+	brnQ	LU632_RS18890	0.52	-1.4
3,564,416	+	brnQ	LU632_RS18890	0.52	+0.5
3,564,417	-	brnQ	LU632_RS18890	0.52	-1.9
3,564,417	-	brnQ	LU632_RS18890	0.52	+0.7
3,564,500	-	brnQ	LU632_RS18890	0.58	-1.5
3,564,571	-	brnQ	LU632_RS18890	0.64	-1.0
3,564,571	-	brnQ	LU632_RS18890	0.64	+0.3