Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18700

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,532,196	+		LU632_RS18690	0.12	-2.2
3,532,197	-		LU632_RS18690	0.12	-0.9
3,532,224	+		LU632_RS18690	0.17	+1.3
3,532,225	-		LU632_RS18690	0.17	+0.3
3,532,225	-		LU632_RS18690	0.17	-0.1
3,532,287	+		LU632_RS18690	0.28	-0.3
3,532,288	-		LU632_RS18690	0.28	-0.9
3,532,422	+		LU632_RS18690	0.51	-2.0
3,532,472	-		LU632_RS18690	0.60	-1.7
3,532,475	+		LU632_RS18690	0.61	+0.2
3,532,475	+		LU632_RS18690	0.61	-1.5
3,532,475	+		LU632_RS18690	0.61	+0.3
3,532,475	+		LU632_RS18690	0.61	+1.5
3,532,476	-		LU632_RS18690	0.61	-1.5
3,532,476	-		LU632_RS18690	0.61	+1.5
3,532,476	-		LU632_RS18690	0.61	+2.2
3,532,476	-		LU632_RS18690	0.61	-2.2
3,532,539	+		LU632_RS18690	0.72	+1.1
3,532,540	-		LU632_RS18690	0.72	+1.5
3,532,561	+		LU632_RS18690	0.76	-0.9
3,532,603	+		LU632_RS18690	0.83	-0.3
3,532,607	+		LU632_RS18690	0.84	-1.1
3,532,675	+				-0.9
3,532,703	+				+0.3
3,532,976	-		LU632_RS18695	0.61	-0.3
3,532,976	-		LU632_RS18695	0.61	-0.5
3,533,016	+		LU632_RS18695	0.70	-1.3
3,533,019	+		LU632_RS18695	0.71	-0.1
3,533,019	+		LU632_RS18695	0.71	-1.0
3,533,122	+				-0.7
3,533,122	+				+0.1
3,533,123	-				-1.6
3,533,123	-				+0.5
3,533,123	-				-1.3
3,533,143	+				-0.5
3,533,431	+		LU632_RS18700	0.61	-1.0
3,533,432	-		LU632_RS18700	0.61	-0.3
3,533,500	+		LU632_RS18700	0.75	-0.5
3,533,664	+				+0.3
3,533,674	+				-1.0
3,533,675	-				-1.8
3,533,700	-				+0.5
3,533,900	-		LU632_RS18705	0.23	+0.2
3,533,900	-		LU632_RS18705	0.23	+2.1
3,533,933	+		LU632_RS18705	0.26	-0.8
3,534,078	+		LU632_RS18705	0.42	-0.3
3,534,121	-		LU632_RS18705	0.46	-1.6
3,534,121	-		LU632_RS18705	0.46	+1.5
3,534,121	-		LU632_RS18705	0.46	+1.5
3,534,122	+		LU632_RS18705	0.47	+1.5
3,534,122	+		LU632_RS18705	0.47	-1.8
3,534,201	+		LU632_RS18705	0.55	+0.3
3,534,224	+		LU632_RS18705	0.58	-0.5
3,534,225	-		LU632_RS18705	0.58	-0.4
3,534,225	-		LU632_RS18705	0.58	+0.3
3,534,320	+		LU632_RS18705	0.68	-0.5
3,534,320	+		LU632_RS18705	0.68	+0.0
3,534,320	+		LU632_RS18705	0.68	-0.5
3,534,321	-		LU632_RS18705	0.68	-0.3
3,534,321	-		LU632_RS18705	0.68	+0.8
3,534,321	-		LU632_RS18705	0.68	-0.9
3,534,345	+		LU632_RS18705	0.71	-1.0
3,534,364	+		LU632_RS18705	0.73	-1.3
3,534,414	+		LU632_RS18705	0.78	+0.0
3,534,415	-		LU632_RS18705	0.78	+0.7
3,534,415	-		LU632_RS18705	0.78	-2.5
3,534,420	+		LU632_RS18705	0.79	-1.8
3,534,421	-		LU632_RS18705	0.79	+0.5
3,534,477	-		LU632_RS18705	0.85	-0.1
3,534,477	-		LU632_RS18705	0.85	-0.1
3,534,524	+				+0.5
3,534,525	-				-0.4
3,534,525	-				-2.2
3,534,591	+				-0.7
3,534,592	-				-0.5