Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18265

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,448,479	+		LU632_RS18255	0.36	+0.2
3,448,513	+		LU632_RS18255	0.45	+1.1
3,448,664	-				+0.4
3,448,850	+		LU632_RS18260	0.34	-0.7
3,448,871	+		LU632_RS18260	0.38	-0.7
3,448,872	-		LU632_RS18260	0.38	-1.1
3,448,901	+		LU632_RS18260	0.43	+2.9
3,448,901	+		LU632_RS18260	0.43	-1.2
3,448,901	+		LU632_RS18260	0.43	-0.3
3,449,019	+		LU632_RS18260	0.65	+0.4
3,449,020	-		LU632_RS18260	0.65	+1.1
3,449,020	-		LU632_RS18260	0.65	+1.4
3,449,065	+		LU632_RS18260	0.73	-0.6
3,449,066	-		LU632_RS18260	0.73	-2.5
3,449,157	-		LU632_RS18260	0.90	+0.4
3,449,193	-				-2.0
3,449,226	+				-1.6
3,449,226	+				-0.1
3,449,226	+				+0.8
3,449,227	-				+1.5
3,449,411	-				-0.2
3,449,416	-				-0.5
3,449,466	+				-0.3
3,449,467	-				+0.0
3,449,752	+		LU632_RS18265	0.33	-0.1
3,449,753	-		LU632_RS18265	0.33	-0.3
3,449,922	+		LU632_RS18265	0.53	+2.4
3,449,941	+		LU632_RS18265	0.56	-1.5
3,449,950	+		LU632_RS18265	0.57	-1.3
3,449,951	-		LU632_RS18265	0.57	+0.8
3,450,003	+		LU632_RS18265	0.63	-1.9
3,450,023	-		LU632_RS18265	0.65	+1.4
3,450,023	-		LU632_RS18265	0.65	+1.0
3,450,033	-		LU632_RS18265	0.67	+2.2
3,450,033	-		LU632_RS18265	0.67	+1.8
3,450,037	-		LU632_RS18265	0.67	+2.8
3,450,171	-		LU632_RS18265	0.83	+0.2
3,450,177	+		LU632_RS18265	0.84	-0.7
3,450,183	-		LU632_RS18265	0.84	+1.8
3,450,239	+				-0.4
3,450,242	-				+0.1
3,450,274	-				-0.2
3,450,293	-				-1.2
3,450,295	-				-0.6
3,450,377	-				+0.6
3,450,385	+				-0.3
3,450,617	+	amtB	LU632_RS18270	0.19	+0.2
3,450,618	-	amtB	LU632_RS18270	0.19	+0.9
3,450,696	-	amtB	LU632_RS18270	0.25	+0.5
3,450,741	+	amtB	LU632_RS18270	0.28	+0.4
3,450,970	+	amtB	LU632_RS18270	0.46	-2.4
3,450,970	+	amtB	LU632_RS18270	0.46	+1.5
3,450,971	-	amtB	LU632_RS18270	0.46	+0.0
3,450,971	-	amtB	LU632_RS18270	0.46	-0.1
3,451,058	-	amtB	LU632_RS18270	0.52	+3.0
3,451,156	-	amtB	LU632_RS18270	0.60	+0.2
3,451,169	+	amtB	LU632_RS18270	0.61	+3.4
3,451,169	+	amtB	LU632_RS18270	0.61	+0.4
3,451,170	-	amtB	LU632_RS18270	0.61	-0.5
3,451,173	+	amtB	LU632_RS18270	0.61	+0.4
3,451,173	+	amtB	LU632_RS18270	0.61	-0.3
3,451,173	+	amtB	LU632_RS18270	0.61	+1.9
3,451,178	-	amtB	LU632_RS18270	0.62	-0.6
3,451,196	+	amtB	LU632_RS18270	0.63	-0.2
3,451,302	-	amtB	LU632_RS18270	0.71	-0.1
3,451,302	-	amtB	LU632_RS18270	0.71	-0.9
3,451,309	+	amtB	LU632_RS18270	0.72	+0.8