Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17965 and LU632_RS17970 are separated by 113 nucleotides LU632_RS17970 and purL are separated by 159 nucleotides purL and mltF are separated by 270 nucleotides
LU632_RS17965: LU632_RS17965 - IS481 family transposase, at 3,390,168 to 3,391,208
_RS17965
LU632_RS17970: LU632_RS17970 - transposase domain-containing protein, at 3,391,322 to 3,391,465
_RS17970
LU632_RS17975: purL - phosphoribosylformylglycinamidine synthase, at 3,391,625 to 3,395,512
purL
LU632_RS17980: mltF - membrane-bound lytic murein transglycosylase MltF, at 3,395,783 to 3,397,243
mltF
Position (kb) 3391
3392
3393
3394
3395
3396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.558 kb on + strand at 3391.559 kb on - strand at 3391.601 kb on - strand at 3391.626 kb on + strand at 3391.658 kb on - strand at 3391.744 kb on + strand at 3391.744 kb on + strand at 3391.745 kb on - strand at 3391.840 kb on + strand at 3391.870 kb on + strand at 3392.173 kb on + strand, within purL at 3392.217 kb on - strand, within purL at 3392.289 kb on - strand, within purL at 3392.382 kb on - strand, within purL at 3392.399 kb on + strand, within purL at 3392.400 kb on - strand, within purL at 3392.578 kb on + strand, within purL at 3392.593 kb on - strand, within purL at 3392.594 kb on + strand, within purL at 3392.614 kb on + strand, within purL at 3392.618 kb on - strand, within purL at 3392.650 kb on + strand, within purL at 3392.650 kb on + strand, within purL at 3392.651 kb on - strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.789 kb on - strand, within purL at 3392.942 kb on + strand, within purL at 3392.943 kb on - strand, within purL at 3393.182 kb on - strand, within purL at 3393.255 kb on + strand, within purL at 3393.255 kb on + strand, within purL at 3393.256 kb on - strand, within purL at 3393.256 kb on - strand, within purL at 3393.447 kb on + strand, within purL at 3393.448 kb on - strand, within purL at 3393.482 kb on - strand, within purL at 3393.542 kb on - strand, within purL at 3393.719 kb on - strand, within purL at 3393.730 kb on + strand, within purL at 3393.731 kb on - strand, within purL at 3393.733 kb on + strand, within purL at 3393.736 kb on + strand, within purL at 3393.736 kb on + strand, within purL at 3393.737 kb on - strand, within purL at 3393.742 kb on - strand, within purL at 3393.865 kb on - strand, within purL at 3393.890 kb on + strand, within purL at 3393.891 kb on - strand, within purL at 3393.891 kb on - strand, within purL at 3393.891 kb on - strand, within purL at 3394.150 kb on + strand, within purL at 3394.240 kb on + strand, within purL at 3394.341 kb on + strand, within purL at 3394.435 kb on + strand, within purL at 3394.441 kb on + strand, within purL at 3394.441 kb on + strand, within purL at 3394.442 kb on - strand, within purL at 3394.677 kb on + strand, within purL at 3394.677 kb on + strand, within purL at 3394.693 kb on + strand, within purL at 3394.694 kb on - strand, within purL at 3394.697 kb on - strand, within purL at 3394.697 kb on - strand, within purL at 3394.698 kb on + strand, within purL at 3394.699 kb on - strand, within purL at 3394.699 kb on - strand, within purL at 3394.783 kb on + strand, within purL at 3394.891 kb on + strand, within purL at 3394.891 kb on + strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.893 kb on + strand, within purL at 3394.893 kb on + strand, within purL at 3394.893 kb on + strand, within purL at 3394.894 kb on - strand, within purL at 3395.024 kb on + strand, within purL at 3395.025 kb on - strand, within purL at 3395.025 kb on - strand, within purL at 3395.025 kb on - strand, within purL at 3395.026 kb on + strand, within purL at 3395.123 kb on + strand, within purL at 3395.176 kb on - strand at 3395.224 kb on + strand at 3395.225 kb on - strand at 3395.291 kb on + strand at 3395.291 kb on + strand at 3395.292 kb on - strand at 3395.331 kb on + strand at 3395.332 kb on - strand at 3395.332 kb on - strand at 3395.332 kb on - strand at 3395.413 kb on - strand at 3395.461 kb on + strand at 3395.462 kb on - strand at 3395.581 kb on + strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.625 kb on - strand at 3395.732 kb on + strand at 3395.732 kb on + strand at 3395.732 kb on + strand at 3395.733 kb on - strand at 3395.733 kb on - strand at 3395.737 kb on - strand at 3395.737 kb on - strand at 3395.799 kb on + strand at 3395.913 kb on + strand at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.949 kb on - strand, within mltF at 3395.949 kb on - strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3396.011 kb on + strand, within mltF at 3396.012 kb on - strand, within mltF at 3396.155 kb on + strand, within mltF at 3396.158 kb on + strand, within mltF at 3396.159 kb on - strand, within mltF at 3396.235 kb on + strand, within mltF at 3396.257 kb on + strand, within mltF at 3396.326 kb on - strand, within mltF at 3396.375 kb on - strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.475 kb on + strand, within mltF at 3396.475 kb on + strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 3,391,514 + +1.0 3,391,514 + +1.2 3,391,514 + -0.4 3,391,514 + +0.4 3,391,514 + +0.2 3,391,558 + -1.2 3,391,559 - +0.1 3,391,601 - -1.0 3,391,626 + +1.3 3,391,658 - -0.2 3,391,744 + -2.2 3,391,744 + -0.5 3,391,745 - -1.9 3,391,840 + -3.8 3,391,870 + -2.0 3,392,173 + purL LU632_RS17975 0.14 -1.8 3,392,217 - purL LU632_RS17975 0.15 -2.9 3,392,289 - purL LU632_RS17975 0.17 -1.4 3,392,382 - purL LU632_RS17975 0.19 -0.9 3,392,399 + purL LU632_RS17975 0.20 -2.5 3,392,400 - purL LU632_RS17975 0.20 -2.2 3,392,578 + purL LU632_RS17975 0.25 -2.3 3,392,593 - purL LU632_RS17975 0.25 -2.8 3,392,594 + purL LU632_RS17975 0.25 -1.8 3,392,614 + purL LU632_RS17975 0.25 -1.0 3,392,618 - purL LU632_RS17975 0.26 -1.2 3,392,650 + purL LU632_RS17975 0.26 -1.2 3,392,650 + purL LU632_RS17975 0.26 -0.2 3,392,651 - purL LU632_RS17975 0.26 +0.4 3,392,652 + purL LU632_RS17975 0.26 -1.2 3,392,652 + purL LU632_RS17975 0.26 -3.1 3,392,652 + purL LU632_RS17975 0.26 +1.4 3,392,652 + purL LU632_RS17975 0.26 -2.6 3,392,653 - purL LU632_RS17975 0.26 -1.8 3,392,653 - purL LU632_RS17975 0.26 -0.6 3,392,653 - purL LU632_RS17975 0.26 -1.5 3,392,653 - purL LU632_RS17975 0.26 -3.3 3,392,653 - purL LU632_RS17975 0.26 -1.0 3,392,653 - purL LU632_RS17975 0.26 -3.2 3,392,789 - purL LU632_RS17975 0.30 -3.2 3,392,942 + purL LU632_RS17975 0.34 -1.7 3,392,943 - purL LU632_RS17975 0.34 -1.8 3,393,182 - purL LU632_RS17975 0.40 -1.2 3,393,255 + purL LU632_RS17975 0.42 -2.0 3,393,255 + purL LU632_RS17975 0.42 -1.8 3,393,256 - purL LU632_RS17975 0.42 -1.4 3,393,256 - purL LU632_RS17975 0.42 -1.5 3,393,447 + purL LU632_RS17975 0.47 -1.4 3,393,448 - purL LU632_RS17975 0.47 -0.9 3,393,482 - purL LU632_RS17975 0.48 +0.2 3,393,542 - purL LU632_RS17975 0.49 -1.7 3,393,719 - purL LU632_RS17975 0.54 -0.2 3,393,730 + purL LU632_RS17975 0.54 -1.3 3,393,731 - purL LU632_RS17975 0.54 -2.6 3,393,733 + purL LU632_RS17975 0.54 -2.4 3,393,736 + purL LU632_RS17975 0.54 -0.2 3,393,736 + purL LU632_RS17975 0.54 -0.2 3,393,737 - purL LU632_RS17975 0.54 -2.6 3,393,742 - purL LU632_RS17975 0.54 -2.6 3,393,865 - purL LU632_RS17975 0.58 -1.4 3,393,890 + purL LU632_RS17975 0.58 -1.6 3,393,891 - purL LU632_RS17975 0.58 +0.4 3,393,891 - purL LU632_RS17975 0.58 -2.0 3,393,891 - purL LU632_RS17975 0.58 -2.0 3,394,150 + purL LU632_RS17975 0.65 -2.2 3,394,240 + purL LU632_RS17975 0.67 -0.7 3,394,341 + purL LU632_RS17975 0.70 -1.5 3,394,435 + purL LU632_RS17975 0.72 -0.9 3,394,441 + purL LU632_RS17975 0.72 -2.0 3,394,441 + purL LU632_RS17975 0.72 -1.6 3,394,442 - purL LU632_RS17975 0.72 -1.8 3,394,677 + purL LU632_RS17975 0.78 -1.6 3,394,677 + purL LU632_RS17975 0.78 -3.1 3,394,693 + purL LU632_RS17975 0.79 -1.0 3,394,694 - purL LU632_RS17975 0.79 +1.4 3,394,697 - purL LU632_RS17975 0.79 -0.9 3,394,697 - purL LU632_RS17975 0.79 -1.5 3,394,698 + purL LU632_RS17975 0.79 -1.4 3,394,699 - purL LU632_RS17975 0.79 -2.6 3,394,699 - purL LU632_RS17975 0.79 -0.9 3,394,783 + purL LU632_RS17975 0.81 -2.9 3,394,891 + purL LU632_RS17975 0.84 -1.6 3,394,891 + purL LU632_RS17975 0.84 -2.9 3,394,892 - purL LU632_RS17975 0.84 -2.4 3,394,892 - purL LU632_RS17975 0.84 -1.8 3,394,892 - purL LU632_RS17975 0.84 -1.6 3,394,892 - purL LU632_RS17975 0.84 -2.8 3,394,893 + purL LU632_RS17975 0.84 -3.8 3,394,893 + purL LU632_RS17975 0.84 -1.6 3,394,893 + purL LU632_RS17975 0.84 -0.2 3,394,894 - purL LU632_RS17975 0.84 -2.9 3,395,024 + purL LU632_RS17975 0.87 -2.2 3,395,025 - purL LU632_RS17975 0.87 -0.6 3,395,025 - purL LU632_RS17975 0.87 -2.0 3,395,025 - purL LU632_RS17975 0.87 -1.6 3,395,026 + purL LU632_RS17975 0.87 -1.8 3,395,123 + purL LU632_RS17975 0.90 -1.2 3,395,176 - -1.3 3,395,224 + -1.2 3,395,225 - -1.4 3,395,291 + -0.6 3,395,291 + -2.1 3,395,292 - -2.6 3,395,331 + -0.7 3,395,332 - +0.4 3,395,332 - -3.1 3,395,332 - -2.1 3,395,413 - -1.6 3,395,461 + -1.5 3,395,462 - -1.6 3,395,581 + -1.5 3,395,584 - -0.6 3,395,584 - +1.2 3,395,584 - +0.4 3,395,584 - +1.2 3,395,625 - +0.4 3,395,732 + -0.9 3,395,732 + +2.7 3,395,732 + +0.2 3,395,733 - -0.1 3,395,733 - -0.5 3,395,737 - +1.0 3,395,737 - -0.4 3,395,799 + +0.1 3,395,913 + -2.0 3,395,948 + mltF LU632_RS17980 0.11 +0.1 3,395,948 + mltF LU632_RS17980 0.11 -0.6 3,395,948 + mltF LU632_RS17980 0.11 +1.4 3,395,948 + mltF LU632_RS17980 0.11 +0.4 3,395,948 + mltF LU632_RS17980 0.11 +1.0 3,395,949 - mltF LU632_RS17980 0.11 -0.2 3,395,949 - mltF LU632_RS17980 0.11 -0.9 3,395,950 + mltF LU632_RS17980 0.11 -0.2 3,395,950 + mltF LU632_RS17980 0.11 +0.7 3,395,950 + mltF LU632_RS17980 0.11 -0.2 3,395,951 - mltF LU632_RS17980 0.11 -1.4 3,395,951 - mltF LU632_RS17980 0.11 -1.4 3,395,951 - mltF LU632_RS17980 0.11 +1.0 3,395,951 - mltF LU632_RS17980 0.11 -1.4 3,395,951 - mltF LU632_RS17980 0.11 -1.0 3,395,951 - mltF LU632_RS17980 0.11 +1.4 3,396,011 + mltF LU632_RS17980 0.16 -1.8 3,396,012 - mltF LU632_RS17980 0.16 +0.2 3,396,155 + mltF LU632_RS17980 0.25 -0.5 3,396,158 + mltF LU632_RS17980 0.26 -0.2 3,396,159 - mltF LU632_RS17980 0.26 -0.0 3,396,235 + mltF LU632_RS17980 0.31 +0.6 3,396,257 + mltF LU632_RS17980 0.32 -0.7 3,396,326 - mltF LU632_RS17980 0.37 -0.6 3,396,375 - mltF LU632_RS17980 0.41 -0.5 3,396,473 + mltF LU632_RS17980 0.47 -1.2 3,396,473 + mltF LU632_RS17980 0.47 -0.9 3,396,473 + mltF LU632_RS17980 0.47 -2.4 3,396,475 + mltF LU632_RS17980 0.47 -2.2 3,396,475 + mltF LU632_RS17980 0.47 -0.2 3,396,476 - mltF LU632_RS17980 0.47 +0.4 3,396,476 - mltF LU632_RS17980 0.47 -1.3 3,396,476 - mltF LU632_RS17980 0.47 +2.6 3,396,476 - mltF LU632_RS17980 0.47 +0.4 3,396,476 - mltF LU632_RS17980 0.47 -1.9 3,396,476 - mltF LU632_RS17980 0.47 +2.5
Or see this region's nucleotide sequence