Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17875

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,373,706	+				+1.4
3,373,707	-				-1.6
3,373,708	+				-2.3
3,373,708	+				+0.4
3,373,708	+				-1.6
3,373,709	-				+1.4
3,373,709	-				+1.3
3,373,860	-	iscR	LU632_RS17875	0.14	-0.2
3,374,205	+	iscR	LU632_RS17875	0.83	+0.4
3,374,206	-	iscR	LU632_RS17875	0.83	-3.1
3,374,206	-	iscR	LU632_RS17875	0.83	-1.6
3,374,250	-				-1.9
3,374,274	-				+1.0
3,374,503	+				+0.2
3,374,549	-	trmJ	LU632_RS17880	0.13	-0.1
3,374,600	+	trmJ	LU632_RS17880	0.20	-2.0
3,374,600	+	trmJ	LU632_RS17880	0.20	-0.3
3,374,601	-	trmJ	LU632_RS17880	0.20	-2.5
3,374,626	-	trmJ	LU632_RS17880	0.24	+0.5
3,374,656	-	trmJ	LU632_RS17880	0.28	-1.3
3,374,670	+	trmJ	LU632_RS17880	0.30	+1.2
3,374,721	+	trmJ	LU632_RS17880	0.37	+0.5
3,374,729	-	trmJ	LU632_RS17880	0.38	-1.4
3,375,082	-	trmJ	LU632_RS17880	0.86	-1.2
3,375,181	+				+0.8
3,375,181	+				+0.5
3,375,181	+				+0.6
3,375,181	+				-0.5
3,375,181	+				-1.0
3,375,182	-				+1.9
3,375,182	-				+1.7
3,375,182	-				+0.4
3,375,182	-				-2.4
3,375,182	-				+0.4
3,375,204	-				-1.6
3,375,209	-				-0.3
3,375,223	-				-0.6