Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17595

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,304,611	-		LU632_RS17590	0.21	-0.0
3,304,718	-		LU632_RS17590	0.30	+0.6
3,304,718	-		LU632_RS17590	0.30	+0.7
3,304,718	-		LU632_RS17590	0.30	+0.6
3,304,796	+		LU632_RS17590	0.37	-2.9
3,304,819	+		LU632_RS17590	0.39	+0.2
3,304,820	-		LU632_RS17590	0.39	-0.2
3,304,821	+		LU632_RS17590	0.39	-2.5
3,304,838	+		LU632_RS17590	0.40	+0.1
3,304,839	-		LU632_RS17590	0.40	-0.2
3,304,839	-		LU632_RS17590	0.40	-0.1
3,304,902	+		LU632_RS17590	0.46	+1.2
3,304,902	+		LU632_RS17590	0.46	+1.1
3,304,902	+		LU632_RS17590	0.46	+0.7
3,304,903	-		LU632_RS17590	0.46	-0.9
3,304,903	-		LU632_RS17590	0.46	+0.7
3,304,904	+		LU632_RS17590	0.46	+0.9
3,304,904	+		LU632_RS17590	0.46	-0.1
3,304,905	-		LU632_RS17590	0.46	-1.1
3,305,142	+		LU632_RS17590	0.66	-0.7
3,305,143	-		LU632_RS17590	0.66	+0.3
3,305,178	-		LU632_RS17590	0.69	-0.9
3,305,247	+		LU632_RS17590	0.75	+0.6
3,305,247	+		LU632_RS17590	0.75	-1.4
3,305,364	-		LU632_RS17590	0.85	-1.3
3,305,369	-		LU632_RS17590	0.85	-1.4
3,305,396	+		LU632_RS17590	0.87	-0.1
3,305,416	+		LU632_RS17590	0.89	+2.3
3,305,471	+				-0.1
3,305,471	+				+0.2
3,305,471	+				+0.4
3,305,471	+				+0.8
3,305,471	+				+0.4
3,305,472	-				+1.2
3,305,472	-				-1.6
3,305,472	-				+0.6
3,305,472	-				-0.0
3,305,475	+				+0.7
3,305,475	+				-0.9
3,305,475	+				+0.4
3,305,475	+				+0.4
3,305,475	+				-1.9
3,305,476	-				+0.1
3,305,476	-				+0.4
3,305,476	-				+0.4
3,305,476	-				+0.7
3,305,570	-				-1.1
3,305,690	+	rsuA	LU632_RS17595	0.18	+2.0
3,305,690	+	rsuA	LU632_RS17595	0.18	+0.4
3,305,691	-	rsuA	LU632_RS17595	0.18	-0.2
3,305,691	-	rsuA	LU632_RS17595	0.18	+0.7
3,305,700	-	rsuA	LU632_RS17595	0.19	-0.7
3,305,725	+	rsuA	LU632_RS17595	0.22	+0.9
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.3
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.4
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.6
3,305,726	-	rsuA	LU632_RS17595	0.23	+0.5
3,305,743	-	rsuA	LU632_RS17595	0.25	-0.9
3,305,759	-	rsuA	LU632_RS17595	0.27	+1.8
3,305,825	-	rsuA	LU632_RS17595	0.36	+1.0
3,306,019	+	rsuA	LU632_RS17595	0.63	-0.3
3,306,100	+	rsuA	LU632_RS17595	0.74	-1.9
3,306,101	-	rsuA	LU632_RS17595	0.74	+0.7
3,306,101	-	rsuA	LU632_RS17595	0.74	-0.8
3,306,144	+	rsuA	LU632_RS17595	0.80	-0.6
3,306,144	+	rsuA	LU632_RS17595	0.80	-0.8
3,306,224	+				+1.2
3,306,224	+				-0.6
3,306,224	+				+0.3
3,306,225	-				+0.3
3,306,377	+				-0.9
3,306,399	+				+1.4
3,306,399	+				-0.2
3,306,399	+				-0.5
3,306,399	+				-0.2
3,306,400	-				-0.3
3,306,401	+				+0.4
3,306,461	-				+0.6
3,306,461	-				+1.4
3,306,461	-				-0.2
3,306,505	-				+0.9
3,306,510	-				-0.5
3,306,540	+				-0.6
3,306,541	-				+0.7
3,306,546	+				+0.1
3,306,547	-				+0.9
3,306,550	+				+0.2
3,306,551	-				+2.4
3,306,551	-				-2.1
3,306,669	+				-0.6
3,306,773	+		LU632_RS17600	0.16	+0.8
3,306,773	+		LU632_RS17600	0.16	-1.5
3,306,834	-		LU632_RS17600	0.19	+0.6
3,306,837	+		LU632_RS17600	0.19	-1.2
3,306,857	+		LU632_RS17600	0.21	-1.2
3,306,901	+		LU632_RS17600	0.23	+2.4
3,306,911	+		LU632_RS17600	0.24	-0.9
3,306,978	-		LU632_RS17600	0.27	+0.1
3,306,978	-		LU632_RS17600	0.27	+0.3
3,306,978	-		LU632_RS17600	0.27	-0.9
3,306,979	+		LU632_RS17600	0.28	-2.0
3,306,979	+		LU632_RS17600	0.28	+0.1
3,306,980	-		LU632_RS17600	0.28	-0.4
3,306,980	-		LU632_RS17600	0.28	-1.0
3,307,039	-		LU632_RS17600	0.31	-0.1
3,307,043	-		LU632_RS17600	0.31	+2.8
3,307,060	+		LU632_RS17600	0.32	+0.7
3,307,060	+		LU632_RS17600	0.32	-1.4
3,307,062	+		LU632_RS17600	0.32	+0.9
3,307,062	+		LU632_RS17600	0.32	-0.8
3,307,063	-		LU632_RS17600	0.32	-0.2
3,307,204	-		LU632_RS17600	0.40	+1.8
3,307,207	-		LU632_RS17600	0.41	-0.2