Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17230

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,238,187	+		LU632_RS17215	0.41	+0.1
3,238,333	+				+0.3
3,238,333	+				+0.3
3,238,338	+				-0.1
3,238,381	-				-1.7
3,238,381	-				+0.6
3,238,461	+		LU632_RS17220	0.16	-1.2
3,238,485	+		LU632_RS17220	0.29	-0.0
3,238,632	+				+0.6
3,238,633	-				+0.7
3,238,642	-				-2.4
3,238,726	-		LU632_RS17225	0.22	-0.2
3,238,770	-		LU632_RS17225	0.33	-0.1
3,238,778	-		LU632_RS17225	0.35	+0.9
3,238,845	+		LU632_RS17225	0.52	-1.8
3,238,849	+		LU632_RS17225	0.53	+3.4
3,238,849	+		LU632_RS17225	0.53	+0.1
3,238,849	+		LU632_RS17225	0.53	+0.6
3,238,977	+		LU632_RS17225	0.84	+0.6
3,239,280	+		LU632_RS17230	0.57	-0.0
3,239,280	+		LU632_RS17230	0.57	-2.2
3,239,339	+		LU632_RS17230	0.73	-1.5
3,239,363	-		LU632_RS17230	0.80	-0.6
3,239,460	+				-0.4
3,239,461	-				-1.4
3,239,478	+				-0.8
3,239,482	+				+1.4
3,239,482	+				-0.3
3,239,483	-				+1.7
3,239,519	+				-0.0
3,239,520	-				+0.3
3,239,520	-				-0.3
3,239,739	+		LU632_RS17235	0.34	+1.0
3,239,739	+		LU632_RS17235	0.34	+1.9
3,239,740	-		LU632_RS17235	0.34	-1.7
3,239,744	-		LU632_RS17235	0.34	+1.4
3,239,744	-		LU632_RS17235	0.34	-1.4
3,239,746	+		LU632_RS17235	0.35	-0.2
3,239,837	+		LU632_RS17235	0.45	-1.8
3,239,852	-		LU632_RS17235	0.46	-0.6
3,239,976	+		LU632_RS17235	0.60	+2.5
3,240,055	-		LU632_RS17235	0.69	-1.6
3,240,079	+		LU632_RS17235	0.71	+0.8
3,240,079	+		LU632_RS17235	0.71	-0.3
3,240,079	+		LU632_RS17235	0.71	-0.6
3,240,117	-		LU632_RS17235	0.75	-0.6
3,240,117	-		LU632_RS17235	0.75	+0.8
3,240,117	-		LU632_RS17235	0.75	+0.3
3,240,278	+				+1.3
3,240,278	+				+0.7
3,240,279	-				-0.2
3,240,279	-				+0.3
3,240,279	-				-0.2
3,240,413	-		LU632_RS17240	0.11	-1.8
3,240,417	+		LU632_RS17240	0.11	+1.4
3,240,421	-		LU632_RS17240	0.12	-2.6