Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16775

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,158,938	-				-0.8
3,158,953	+				+3.7
3,158,953	+				+0.2
3,158,954	-				-0.0
3,158,958	-				+0.9
3,158,981	+				-0.5
3,158,982	-				+1.8
3,159,036	+				+0.2
3,159,071	-		LU632_RS16770	0.14	+4.5
3,159,071	-		LU632_RS16770	0.14	+0.2
3,159,172	-		LU632_RS16770	0.25	-0.6
3,159,325	-		LU632_RS16770	0.43	-2.4
3,159,336	-		LU632_RS16770	0.45	+0.6
3,159,339	+		LU632_RS16770	0.45	-0.7
3,159,339	+		LU632_RS16770	0.45	+0.1
3,159,339	+		LU632_RS16770	0.45	-1.8
3,159,339	+		LU632_RS16770	0.45	-1.0
3,159,387	+		LU632_RS16770	0.51	+0.0
3,159,389	+		LU632_RS16770	0.51	+0.6
3,159,390	-		LU632_RS16770	0.51	-1.8
3,159,440	+		LU632_RS16770	0.57	+0.2
3,159,457	-		LU632_RS16770	0.59	+0.2
3,159,510	+		LU632_RS16770	0.65	+0.3
3,159,513	+		LU632_RS16770	0.66	-0.9
3,159,514	-		LU632_RS16770	0.66	-0.5
3,159,565	+		LU632_RS16770	0.72	-0.1
3,159,565	+		LU632_RS16770	0.72	+1.8
3,159,565	+		LU632_RS16770	0.72	-0.7
3,159,565	+		LU632_RS16770	0.72	-1.6
3,159,565	-		LU632_RS16770	0.72	-1.0
3,159,566	-		LU632_RS16770	0.72	+0.7
3,159,566	-		LU632_RS16770	0.72	-0.3
3,159,566	-		LU632_RS16770	0.72	-0.1
3,159,566	-		LU632_RS16770	0.72	+0.8
3,159,566	-		LU632_RS16770	0.72	-1.0
3,159,568	-		LU632_RS16770	0.72	-2.1
3,159,569	+		LU632_RS16770	0.72	-1.0
3,159,570	-		LU632_RS16770	0.72	+0.4
3,159,570	-		LU632_RS16770	0.72	-0.2
3,159,570	-		LU632_RS16770	0.72	-0.3
3,159,570	-		LU632_RS16770	0.72	+0.2
3,159,576	+		LU632_RS16770	0.73	-0.7
3,159,577	-		LU632_RS16770	0.73	+0.8
3,159,577	-		LU632_RS16770	0.73	+1.2
3,159,685	+		LU632_RS16770	0.86	+0.4
3,159,776	+				+0.7
3,159,914	-				+0.4
3,159,924	+				+1.3
3,159,925	-				-0.2
3,159,993	+		LU632_RS16775	0.14	-0.4
3,159,994	-		LU632_RS16775	0.14	+1.2
3,159,994	-		LU632_RS16775	0.14	+2.9
3,159,994	-		LU632_RS16775	0.14	+3.3
3,160,022	+		LU632_RS16775	0.21	+0.5
3,160,023	-		LU632_RS16775	0.21	+0.1
3,160,089	-		LU632_RS16775	0.37	+1.8
3,160,147	+		LU632_RS16775	0.50	+1.0
3,160,156	-		LU632_RS16775	0.53	+0.7
3,160,285	+		LU632_RS16775	0.83	+0.6
3,160,285	+		LU632_RS16775	0.83	-1.8
3,160,298	-		LU632_RS16775	0.86	-1.0
3,160,322	+				+0.5
3,160,355	-				-0.2
3,160,358	+				-0.2
3,160,441	-				+1.5
3,160,483	+				-0.2
3,160,622	+	mmuM	LU632_RS16780	0.17	-0.7
3,160,623	-	mmuM	LU632_RS16780	0.17	-1.1
3,160,623	-	mmuM	LU632_RS16780	0.17	-1.2
3,160,665	+	mmuM	LU632_RS16780	0.22	+1.3
3,160,666	-	mmuM	LU632_RS16780	0.22	-0.9
3,160,669	+	mmuM	LU632_RS16780	0.22	+0.2
3,160,670	-	mmuM	LU632_RS16780	0.23	+0.4
3,160,713	+	mmuM	LU632_RS16780	0.27	+0.7
3,160,713	+	mmuM	LU632_RS16780	0.27	-0.3
3,160,714	-	mmuM	LU632_RS16780	0.27	+0.3
3,160,714	-	mmuM	LU632_RS16780	0.27	+1.2
3,160,719	+	mmuM	LU632_RS16780	0.28	-0.3
3,160,719	+	mmuM	LU632_RS16780	0.28	-0.6
3,160,719	+	mmuM	LU632_RS16780	0.28	-0.0
3,160,720	-	mmuM	LU632_RS16780	0.28	-0.6
3,160,816	+	mmuM	LU632_RS16780	0.38	-0.7
3,160,817	-	mmuM	LU632_RS16780	0.39	-0.1
3,160,910	+	mmuM	LU632_RS16780	0.49	-0.7
3,160,910	+	mmuM	LU632_RS16780	0.49	+0.8
3,160,910	+	mmuM	LU632_RS16780	0.49	+0.4
3,160,911	-	mmuM	LU632_RS16780	0.49	+0.6
3,160,912	+	mmuM	LU632_RS16780	0.49	+2.8
3,160,913	-	mmuM	LU632_RS16780	0.49	+1.2
3,161,028	+	mmuM	LU632_RS16780	0.61	-1.0
3,161,028	+	mmuM	LU632_RS16780	0.61	+0.8
3,161,136	+	mmuM	LU632_RS16780	0.73	+1.2
3,161,174	+	mmuM	LU632_RS16780	0.77	+0.9
3,161,213	+	mmuM	LU632_RS16780	0.82	-0.3
3,161,231	+	mmuM	LU632_RS16780	0.83	-1.2
3,161,273	-	mmuM	LU632_RS16780	0.88	+0.7