Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16675

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,147,997	-		LU632_RS16660	0.56	+0.1
3,148,032	+		LU632_RS16660	0.60	-0.1
3,148,032	+		LU632_RS16660	0.60	-3.6
3,148,103	+		LU632_RS16660	0.69	-1.5
3,148,273	-				+0.0
3,148,310	+				-1.0
3,148,311	-				+0.9
3,148,311	-				-0.3
3,148,523	-		LU632_RS16665	0.76	-0.8
3,148,613	-				+0.9
3,148,673	-				+1.7
3,148,676	+				+1.2
3,148,676	+				+0.3
3,148,827	+		LU632_RS16670	0.67	+0.7
3,148,926	+				-0.3
3,148,927	-				-1.1
3,148,993	+				-0.5
3,148,993	+				-0.3
3,148,994	-				+0.6
3,148,995	+				-0.5
3,149,015	-		LU632_RS16675	0.16	-0.8
3,149,029	+		LU632_RS16675	0.21	-2.5
3,149,126	+		LU632_RS16675	0.60	-1.1
3,149,127	-		LU632_RS16675	0.61	-1.5
3,149,150	+		LU632_RS16675	0.70	-1.0
3,149,207	-				+0.2
3,149,319	-		LU632_RS16680	0.43	-1.1
3,149,416	-		LU632_RS16680	0.86	-1.0
3,149,423	+		LU632_RS16680	0.89	-0.3
3,149,427	+				+0.5
3,149,427	+				+0.5
3,149,428	-				+1.3
3,149,428	-				+0.5
3,149,446	+				+1.0
3,149,447	-				+0.6
3,149,495	+		LU632_RS16685	0.11	-2.6
3,149,495	+		LU632_RS16685	0.11	-2.6
3,149,496	-		LU632_RS16685	0.11	+0.0
3,149,550	-		LU632_RS16685	0.20	-0.3
3,149,564	+		LU632_RS16685	0.23	+1.7
3,149,565	-		LU632_RS16685	0.23	+0.5
3,149,757	+		LU632_RS16685	0.55	+0.7
3,149,757	+		LU632_RS16685	0.55	+0.5
3,149,757	+		LU632_RS16685	0.55	+0.7
3,149,761	+		LU632_RS16685	0.56	+1.6
3,149,880	-		LU632_RS16685	0.76	-1.5
3,149,924	-		LU632_RS16685	0.83	-2.6
3,149,924	-		LU632_RS16685	0.83	-0.5
3,149,925	+		LU632_RS16685	0.83	-0.8
3,149,927	+		LU632_RS16685	0.84	+0.6
3,149,983	+				+0.3
3,150,028	+				+0.7
3,150,029	-				+1.7
3,150,055	-				+1.7
3,150,097	-		LU632_RS16690	0.18	+0.5
3,150,097	-		LU632_RS16690	0.18	-0.3
3,150,097	-		LU632_RS16690	0.18	-2.0
3,150,102	+		LU632_RS16690	0.19	-0.8
3,150,128	+		LU632_RS16690	0.25	-0.2
3,150,208	+		LU632_RS16690	0.44	+0.5
3,150,209	-		LU632_RS16690	0.44	-0.1
3,150,209	-		LU632_RS16690	0.44	+1.3
3,150,209	-		LU632_RS16690	0.44	+1.0
3,150,209	-		LU632_RS16690	0.44	+0.6