Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16120

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
3,046,805	-				-2.3
3,046,927	-	sdhC	LU632_RS16115	0.32	-0.9
3,046,982	+	sdhC	LU632_RS16115	0.46	-2.0
3,046,988	+	sdhC	LU632_RS16115	0.47	-0.3
3,046,989	-	sdhC	LU632_RS16115	0.48	-1.4
3,047,064	+	sdhC	LU632_RS16115	0.67	-2.1
3,047,064	+	sdhC	LU632_RS16115	0.67	-2.3
3,047,065	-	sdhC	LU632_RS16115	0.67	-0.3
3,047,065	-	sdhC	LU632_RS16115	0.67	-2.4
3,047,065	-	sdhC	LU632_RS16115	0.67	-1.4
3,047,098	-	sdhC	LU632_RS16115	0.76	-1.3
3,047,098	-	sdhC	LU632_RS16115	0.76	-0.4
3,047,247	-				+0.4
3,047,248	+				-1.5
3,047,266	-				-1.0
3,047,525	+				+0.5
3,047,533	+				+0.6
3,047,533	+				+1.0
3,047,534	-				-1.7
3,047,557	-				-2.0
3,047,561	-				-1.6
3,047,561	-				-1.1
3,047,580	+				+1.8
3,047,580	+				+1.2
3,047,581	-				-0.7
3,047,581	-				-1.2
3,047,583	+				+0.4
3,047,583	+				+0.0
3,047,583	+				+0.0
3,047,583	+				-0.7
3,047,584	-				-1.4
3,047,584	-				-1.4
3,047,584	-				-1.3
3,047,588	-				-0.4
3,047,588	-				-0.6
3,047,594	+				+0.6
3,047,699	+				+1.4
3,047,700	-				-2.0
3,047,700	-				+0.2
3,047,701	+				+0.1
3,047,722	+				+0.2
3,047,723	-				-1.9
3,047,723	-				-1.3
3,047,723	-				-1.9
3,047,723	-				-0.3
3,047,878	+				-3.2
3,047,878	+				-1.0
3,047,916	-				-0.9
3,047,979	+		LU632_RS16120	0.14	-2.0
3,047,979	+		LU632_RS16120	0.14	-0.9
3,047,979	+		LU632_RS16120	0.14	-2.0
3,047,980	-		LU632_RS16120	0.14	-0.4
3,047,980	-		LU632_RS16120	0.14	-1.1
3,047,980	-		LU632_RS16120	0.14	-2.0
3,047,980	-		LU632_RS16120	0.14	-1.4
3,047,980	-		LU632_RS16120	0.14	-2.1
3,048,023	+		LU632_RS16120	0.17	-2.5
3,048,048	-		LU632_RS16120	0.19	-1.0
3,048,048	-		LU632_RS16120	0.19	-1.2
3,048,066	+		LU632_RS16120	0.20	-2.4
3,048,067	-		LU632_RS16120	0.20	-0.5
3,048,067	-		LU632_RS16120	0.20	-2.5
3,048,067	-		LU632_RS16120	0.20	-1.0
3,048,067	-		LU632_RS16120	0.20	-1.6
3,048,096	-		LU632_RS16120	0.23	-1.8
3,048,157	+		LU632_RS16120	0.27	-1.9
3,048,157	+		LU632_RS16120	0.27	-1.1
3,048,157	+		LU632_RS16120	0.27	-0.7
3,048,158	-		LU632_RS16120	0.27	+0.3
3,048,240	+		LU632_RS16120	0.34	-3.3
3,048,241	-		LU632_RS16120	0.34	-2.0
3,048,432	+		LU632_RS16120	0.49	-1.0
3,048,433	-		LU632_RS16120	0.49	-0.3
3,048,627	-		LU632_RS16120	0.64	-2.0
3,048,729	+		LU632_RS16120	0.72	-1.1
3,048,729	+		LU632_RS16120	0.72	-1.6
3,048,731	+		LU632_RS16120	0.72	-1.0
3,048,732	-		LU632_RS16120	0.72	-3.2
3,048,739	-		LU632_RS16120	0.73	-2.1
3,048,758	-		LU632_RS16120	0.74	-1.4
3,048,840	-		LU632_RS16120	0.81	-2.2
3,048,858	+		LU632_RS16120	0.82	-1.8
3,048,863	+		LU632_RS16120	0.82	+1.3
3,048,898	-		LU632_RS16120	0.85	-2.2
3,049,042	-				-0.7
3,049,044	-				-1.3
3,049,223	-	nei	LU632_RS16125	0.13	+0.4
3,049,249	+	nei	LU632_RS16125	0.16	+0.3
3,049,295	-	nei	LU632_RS16125	0.22	-0.7
3,049,301	+	nei	LU632_RS16125	0.23	+0.5
3,049,302	-	nei	LU632_RS16125	0.23	-1.1
3,049,302	-	nei	LU632_RS16125	0.23	+0.2
3,049,509	+	nei	LU632_RS16125	0.49	-2.2
3,049,596	-	nei	LU632_RS16125	0.60	-0.3
3,049,604	-	nei	LU632_RS16125	0.61	+0.9
3,049,604	-	nei	LU632_RS16125	0.61	-1.9
3,049,718	-	nei	LU632_RS16125	0.76	+0.3
3,049,808	-	nei	LU632_RS16125	0.88	+0.0
3,049,907	+				-0.9
3,049,952	+				-0.7
3,049,952	+				-1.3
3,049,952	+				+0.4
3,049,952	+				+0.7
3,049,952	+				+0.4
3,049,953	-				-1.0
3,049,982	+				+0.5
3,049,982	+				-0.6
3,049,983	-				+0.1
3,049,983	-				-2.3
3,050,077	-				-2.0