Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15860

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS15850 and LU632_RS15855 are separated by 102 nucleotidesLU632_RS15855 and istB are separated by 64 nucleotidesistB and istA are separated by 10 nucleotides LU632_RS15850: LU632_RS15850 - IS481 family transposase, at 2,997,271 to 2,998,311 _RS15850 LU632_RS15855: LU632_RS15855 - transposase, at 2,998,414 to 2,998,945 _RS15855 LU632_RS15860: istB - IS21-like element helper ATPase IstB, at 2,999,010 to 2,999,753 istB LU632_RS15865: istA - IS21 family transposase, at 2,999,764 to 3,001,293 istA Position (kb) 2999 3000Strain fitness (log2 ratio) -2 -1 0 1at 2999.360 kb on - strand, within istBat 2999.360 kb on - strand, within istBat 2999.360 kb on - strand, within istB

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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2,999,360 - istB LU632_RS15860 0.47 -1.9
2,999,360 - istB LU632_RS15860 0.47 -1.3
2,999,360 - istB LU632_RS15860 0.47 -1.6

Or see this region's nucleotide sequence