Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15005

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,850,825	+		LU632_RS14995	0.69	-0.6
2,850,895	+		LU632_RS14995	0.86	+0.3
2,850,895	+		LU632_RS14995	0.86	-0.8
2,850,895	+		LU632_RS14995	0.86	-0.3
2,850,895	+		LU632_RS14995	0.86	-1.4
2,850,895	+		LU632_RS14995	0.86	-0.0
2,850,895	+		LU632_RS14995	0.86	-1.4
2,850,895	+		LU632_RS14995	0.86	+0.2
2,850,895	+		LU632_RS14995	0.86	+1.9
2,850,895	+		LU632_RS14995	0.86	+0.7
2,850,895	+		LU632_RS14995	0.86	+1.9
2,850,895	+		LU632_RS14995	0.86	-0.7
2,850,895	+		LU632_RS14995	0.86	+1.2
2,850,895	+		LU632_RS14995	0.86	-0.5
2,850,896	-		LU632_RS14995	0.86	+1.5
2,850,896	-		LU632_RS14995	0.86	-1.4
2,850,896	-		LU632_RS14995	0.86	+0.2
2,850,896	-		LU632_RS14995	0.86	+0.1
2,850,896	-		LU632_RS14995	0.86	+0.2
2,850,896	-		LU632_RS14995	0.86	-1.1
2,850,916	+				+1.4
2,850,991	+				+1.2
2,850,992	-				+0.4
2,851,062	-				-2.6
2,851,097	-				+0.8
2,851,103	-				+0.9
2,851,103	-				-1.8
2,851,179	+				-0.4
2,851,179	+				+3.2
2,851,180	-				+0.6
2,851,299	+		LU632_RS15000	0.59	-1.6
2,851,325	+		LU632_RS15000	0.73	+0.0
2,851,326	-		LU632_RS15000	0.73	+0.7
2,851,364	+				-1.4
2,851,397	+				+1.6
2,851,556	-				+0.3
2,851,557	+				+1.2
2,851,557	+				+1.4
2,851,557	+				+0.4
2,851,557	+				-0.7
2,851,558	-				+0.2
2,851,558	-				-0.1
2,851,694	-				-0.2
2,851,709	+				+1.2
2,851,756	-				-0.9
2,851,761	+				+1.1
2,851,761	+				-0.6
2,851,761	+				+1.1
2,851,761	+				-1.3
2,851,797	-				+0.1
2,851,799	+				-0.5
2,851,799	+				+1.0
2,851,799	+				-0.3
2,851,800	-				+0.1
2,851,800	-				-2.1
2,851,810	+				+0.3
2,851,811	-				+1.2
2,851,950	-		LU632_RS15005	0.50	-1.5
2,851,950	-		LU632_RS15005	0.50	-0.2
2,852,017	+		LU632_RS15005	0.74	-1.8
2,852,017	+		LU632_RS15005	0.74	+0.0
2,852,018	-		LU632_RS15005	0.74	-1.6
2,852,018	-		LU632_RS15005	0.74	-0.3
2,852,139	-		LU632_RS15010	0.15	+0.7
2,852,143	-		LU632_RS15010	0.16	-0.1
2,852,192	+		LU632_RS15010	0.30	+0.1
2,852,192	+		LU632_RS15010	0.30	+1.6
2,852,365	-		LU632_RS15010	0.81	-0.1
2,852,365	-		LU632_RS15010	0.81	+0.4
2,852,431	+				+0.0
2,852,445	-				-0.3
2,852,453	+				+1.1
2,852,470	+				-0.6
2,852,471	-				-1.3
2,852,578	-		LU632_RS15015	0.32	-0.8
2,852,602	+		LU632_RS15015	0.37	+0.0
2,852,633	-		LU632_RS15015	0.44	-0.9
2,852,765	+		LU632_RS15015	0.72	-0.9
2,852,765	+		LU632_RS15015	0.72	-1.0
2,852,766	-		LU632_RS15015	0.72	+0.8
2,852,766	-		LU632_RS15015	0.72	+0.8
2,852,769	+		LU632_RS15015	0.73	-0.1
2,852,770	-		LU632_RS15015	0.73	+0.2
2,852,841	-		LU632_RS15015	0.88	-1.9
2,852,942	+		LU632_RS15020	0.17	-0.3
2,852,942	+		LU632_RS15020	0.17	+0.9
2,852,943	-		LU632_RS15020	0.17	+0.6
2,852,971	-		LU632_RS15020	0.26	-2.5