Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14760

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,805,597	+	nagZ	LU632_RS14755	0.11	+0.8
2,805,597	+	nagZ	LU632_RS14755	0.11	-0.8
2,805,598	-	nagZ	LU632_RS14755	0.11	-2.1
2,805,598	-	nagZ	LU632_RS14755	0.11	+0.3
2,805,598	-	nagZ	LU632_RS14755	0.11	-0.6
2,805,638	-	nagZ	LU632_RS14755	0.15	+1.4
2,805,726	+	nagZ	LU632_RS14755	0.23	-2.7
2,805,727	-	nagZ	LU632_RS14755	0.24	+0.6
2,805,791	+	nagZ	LU632_RS14755	0.30	-0.4
2,805,792	-	nagZ	LU632_RS14755	0.30	+1.3
2,805,815	-	nagZ	LU632_RS14755	0.32	-0.4
2,805,847	+	nagZ	LU632_RS14755	0.35	-0.2
2,805,856	+	nagZ	LU632_RS14755	0.36	-0.1
2,805,856	+	nagZ	LU632_RS14755	0.36	-1.6
2,805,857	-	nagZ	LU632_RS14755	0.36	-1.1
2,805,861	+	nagZ	LU632_RS14755	0.37	-1.4
2,805,862	-	nagZ	LU632_RS14755	0.37	-1.4
2,805,866	-	nagZ	LU632_RS14755	0.37	-0.0
2,805,866	-	nagZ	LU632_RS14755	0.37	-0.2
2,805,866	-	nagZ	LU632_RS14755	0.37	+0.2
2,805,866	-	nagZ	LU632_RS14755	0.37	-2.0
2,805,866	-	nagZ	LU632_RS14755	0.37	-0.9
2,805,922	+	nagZ	LU632_RS14755	0.42	+2.4
2,806,061	-	nagZ	LU632_RS14755	0.56	-0.8
2,806,145	+	nagZ	LU632_RS14755	0.64	-0.5
2,806,166	-	nagZ	LU632_RS14755	0.66	+1.1
2,806,405	+	nagZ	LU632_RS14755	0.89	+0.6
2,806,405	+	nagZ	LU632_RS14755	0.89	-0.4
2,806,420	+				-0.8
2,806,431	-				-1.1
2,806,477	-				-1.2
2,806,490	+				-1.0
2,806,491	-				-0.8
2,806,491	-				-2.2
2,806,491	-				+3.3
2,806,491	-				+0.2
2,806,491	-				-0.0
2,806,493	+				-0.4
2,806,567	+				+0.5
2,806,568	-				-1.4
2,806,605	+				-1.1
2,806,664	+	thiK	LU632_RS14760	0.16	-2.5
2,806,664	+	thiK	LU632_RS14760	0.16	-1.0
2,806,664	+	thiK	LU632_RS14760	0.16	+0.2
2,806,664	+	thiK	LU632_RS14760	0.16	+0.1
2,806,664	+	thiK	LU632_RS14760	0.16	-2.6
2,806,695	+	thiK	LU632_RS14760	0.20	+0.2
2,806,743	-	thiK	LU632_RS14760	0.25	-2.6
2,806,743	-	thiK	LU632_RS14760	0.25	-0.5
2,806,826	+	thiK	LU632_RS14760	0.35	+1.0
2,806,826	+	thiK	LU632_RS14760	0.35	-0.4
2,806,827	-	thiK	LU632_RS14760	0.35	+2.0
2,806,827	-	thiK	LU632_RS14760	0.35	+1.0
2,806,828	+	thiK	LU632_RS14760	0.35	-0.0
2,806,829	-	thiK	LU632_RS14760	0.35	-2.5
2,806,846	+	thiK	LU632_RS14760	0.37	+0.7
2,807,056	+	thiK	LU632_RS14760	0.61	-1.4
2,807,165	+	thiK	LU632_RS14760	0.74	+3.4
2,807,166	-	thiK	LU632_RS14760	0.74	-0.8
2,807,253	-	thiK	LU632_RS14760	0.84	-0.1
2,807,288	+	thiK	LU632_RS14760	0.88	+0.1
2,807,288	+	thiK	LU632_RS14760	0.88	+0.2
2,807,291	-	thiK	LU632_RS14760	0.88	-2.0
2,807,291	-	thiK	LU632_RS14760	0.88	+1.0
2,807,453	+	lpoB	LU632_RS14765	0.18	-0.2
2,807,453	+	lpoB	LU632_RS14765	0.18	+1.2
2,807,457	-	lpoB	LU632_RS14765	0.19	-0.2
2,807,457	-	lpoB	LU632_RS14765	0.19	-0.3
2,807,458	+	lpoB	LU632_RS14765	0.19	-0.9
2,807,467	+	lpoB	LU632_RS14765	0.20	-0.8
2,807,655	-	lpoB	LU632_RS14765	0.53	-0.0
2,807,655	-	lpoB	LU632_RS14765	0.53	-0.5
2,807,784	+	lpoB	LU632_RS14765	0.76	-2.0
2,807,934	-				+1.5
2,807,934	-				-0.5
2,807,961	+				-1.2
2,807,967	+				+2.1
2,807,986	+				-1.1
2,807,986	+				-1.5
2,807,987	-				-2.4
2,807,987	-				+1.5
2,808,096	+		LU632_RS14770	0.39	-1.1
2,808,097	-		LU632_RS14770	0.39	+0.2
2,808,112	-		LU632_RS14770	0.44	-1.4
2,808,116	-		LU632_RS14770	0.45	-0.2
2,808,208	+		LU632_RS14770	0.71	-1.4
2,808,209	-		LU632_RS14770	0.72	-0.2
2,808,209	-		LU632_RS14770	0.72	-0.9
2,808,209	-		LU632_RS14770	0.72	-1.6
2,808,209	-		LU632_RS14770	0.72	-0.6
2,808,263	-		LU632_RS14770	0.87	+1.2
2,808,320	+				-1.1
2,808,351	+				+1.2