Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13850

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,657,345	+	fliD	LU632_RS13840	0.59	+0.5
2,657,345	+	fliD	LU632_RS13840	0.59	+0.7
2,657,346	-	fliD	LU632_RS13840	0.59	+1.6
2,657,347	+	fliD	LU632_RS13840	0.59	-0.2
2,657,384	+	fliD	LU632_RS13840	0.62	-1.7
2,657,384	+	fliD	LU632_RS13840	0.62	-2.0
2,657,394	+	fliD	LU632_RS13840	0.63	-1.4
2,657,394	+	fliD	LU632_RS13840	0.63	+1.1
2,657,394	+	fliD	LU632_RS13840	0.63	-0.7
2,657,405	-	fliD	LU632_RS13840	0.63	-1.2
2,657,461	+	fliD	LU632_RS13840	0.67	+0.0
2,657,515	+	fliD	LU632_RS13840	0.71	+0.3
2,657,668	+	fliD	LU632_RS13840	0.82	-0.1
2,657,677	+	fliD	LU632_RS13840	0.83	+1.1
2,657,807	+				-2.4
2,657,863	+				+1.4
2,657,863	+				+1.9
2,657,937	+				+1.1
2,657,937	+				+1.1
2,658,198	+	fliS	LU632_RS13845	0.65	-1.2
2,658,339	+				+1.5
2,658,362	-				+0.6
2,658,533	-	fliT	LU632_RS13850	0.52	+3.6
2,658,648	-	fliT	LU632_RS13850	0.83	+0.4
2,658,657	+	fliT	LU632_RS13850	0.85	-0.3
2,658,658	-	fliT	LU632_RS13850	0.86	+0.3
2,658,659	+	fliT	LU632_RS13850	0.86	+0.4
2,658,763	+				-1.2
2,658,880	+				+1.6
2,658,880	+				+4.9
2,658,976	+	amyA	LU632_RS13855	0.16	-1.2
2,658,979	-	amyA	LU632_RS13855	0.17	+1.6
2,658,998	-	amyA	LU632_RS13855	0.19	-0.8
2,659,015	-	amyA	LU632_RS13855	0.21	-0.4
2,659,018	+	amyA	LU632_RS13855	0.22	+0.1
2,659,019	-	amyA	LU632_RS13855	0.22	-1.6
2,659,019	-	amyA	LU632_RS13855	0.22	-0.7
2,659,019	-	amyA	LU632_RS13855	0.22	-2.2
2,659,019	-	amyA	LU632_RS13855	0.22	-0.3
2,659,072	+	amyA	LU632_RS13855	0.28	-0.4
2,659,073	-	amyA	LU632_RS13855	0.29	-1.3
2,659,073	-	amyA	LU632_RS13855	0.29	-1.2
2,659,296	+	amyA	LU632_RS13855	0.56	-1.7
2,659,357	+	amyA	LU632_RS13855	0.64	-1.7
2,659,358	-	amyA	LU632_RS13855	0.64	+0.0
2,659,360	+	amyA	LU632_RS13855	0.64	+2.0
2,659,360	+	amyA	LU632_RS13855	0.64	+0.5
2,659,361	-	amyA	LU632_RS13855	0.64	+0.6
2,659,361	-	amyA	LU632_RS13855	0.64	+1.6
2,659,363	-	amyA	LU632_RS13855	0.65	+0.1
2,659,565	-	amyA	LU632_RS13855	0.90	+2.1
2,659,572	-				+0.4
2,659,572	-				+0.1
2,659,601	+				-1.6
2,659,649	+				-0.6
2,659,650	-				-0.3
2,659,650	-				-0.9
2,659,652	-				+0.3
2,659,652	-				-1.0
2,659,672	-				-1.4