Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13830

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,653,584	+		LU632_RS13825	0.77	-2.5
2,653,584	+		LU632_RS13825	0.77	+0.0
2,653,585	-		LU632_RS13825	0.77	-0.4
2,653,585	-		LU632_RS13825	0.77	+0.1
2,653,585	-		LU632_RS13825	0.77	+0.6
2,653,585	-		LU632_RS13825	0.77	+2.1
2,653,585	-		LU632_RS13825	0.77	+1.7
2,653,586	+		LU632_RS13825	0.77	-1.3
2,653,587	-		LU632_RS13825	0.77	+1.1
2,653,742	-		LU632_RS13825	0.81	-1.0
2,653,921	+		LU632_RS13825	0.86	-0.2
2,653,929	-		LU632_RS13825	0.87	-0.1
2,653,947	-		LU632_RS13825	0.87	-1.1
2,653,970	+		LU632_RS13825	0.88	-0.3
2,653,970	+		LU632_RS13825	0.88	-1.5
2,654,075	-				+0.5
2,654,075	-				-1.2
2,654,149	-				+0.0
2,654,149	-				+0.9
2,654,149	-				+1.7
2,654,149	-				+0.2
2,654,209	+				+0.0
2,654,209	+				+0.1
2,654,210	-				+0.6
2,654,213	+				+1.9
2,654,213	+				+1.1
2,654,213	+				+0.0
2,654,214	-				+2.1
2,654,214	-				-0.1
2,654,313	+				+0.1
2,654,313	+				-1.2
2,654,313	+				-0.5
2,654,314	-				-0.3
2,654,352	+				-0.2
2,654,353	-				+0.2
2,654,375	-				+0.5
2,654,472	+		LU632_RS13830	0.48	-1.9
2,654,473	-		LU632_RS13830	0.49	+2.8
2,654,516	+		LU632_RS13830	0.78	+1.0
2,654,551	+				+1.1
2,654,602	-				+0.0
2,654,657	-				-0.5
2,654,759	+				+1.6
2,654,793	-				-0.1
2,654,942	+				-0.8
2,655,006	+				+0.8
2,655,007	-				-1.1
2,655,127	-		LU632_RS13835	0.14	-0.9
2,655,174	+		LU632_RS13835	0.18	+0.3
2,655,175	-		LU632_RS13835	0.18	+0.9
2,655,229	-		LU632_RS13835	0.22	-0.3
2,655,237	-		LU632_RS13835	0.23	-2.1
2,655,349	+		LU632_RS13835	0.32	+1.2
2,655,499	+		LU632_RS13835	0.43	-0.9
2,655,500	-		LU632_RS13835	0.43	-1.2
2,655,500	-		LU632_RS13835	0.43	+4.4
2,655,507	-		LU632_RS13835	0.44	-1.5
2,655,507	-		LU632_RS13835	0.44	-0.2
2,655,534	-		LU632_RS13835	0.46	+0.1
2,655,534	-		LU632_RS13835	0.46	+0.8