Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13820

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,648,757	+				+0.7
2,648,884	-		LU632_RS13815	0.16	+0.9
2,648,884	-		LU632_RS13815	0.16	-0.7
2,648,897	+		LU632_RS13815	0.17	+0.2
2,648,919	+		LU632_RS13815	0.20	+1.4
2,648,955	-		LU632_RS13815	0.24	-1.7
2,648,983	-		LU632_RS13815	0.27	-2.6
2,649,112	-		LU632_RS13815	0.43	+0.3
2,649,112	-		LU632_RS13815	0.43	+0.9
2,649,298	-		LU632_RS13815	0.64	+0.6
2,649,308	+		LU632_RS13815	0.65	-2.4
2,649,308	+		LU632_RS13815	0.65	+1.1
2,649,308	+		LU632_RS13815	0.65	-0.5
2,649,309	-		LU632_RS13815	0.66	+0.7
2,649,309	-		LU632_RS13815	0.66	+0.1
2,649,309	-		LU632_RS13815	0.66	+1.4
2,649,309	-		LU632_RS13815	0.66	-0.6
2,649,431	+		LU632_RS13815	0.80	-0.2
2,649,432	-		LU632_RS13815	0.80	-1.7
2,649,448	+		LU632_RS13815	0.82	+3.3
2,649,449	-		LU632_RS13815	0.82	-1.3
2,649,449	-		LU632_RS13815	0.82	-2.8
2,649,582	-				-0.5
2,649,600	+				-0.0
2,649,723	+				-1.9
2,649,724	-				-0.6
2,649,725	+				-1.9
2,649,726	-				+0.7
2,649,726	-				+0.8
2,649,726	-				+0.6
2,649,760	+				-0.5
2,649,761	-				-0.2
2,649,815	+				-0.9
2,649,900	+		LU632_RS13820	0.16	-2.1
2,649,947	-		LU632_RS13820	0.22	-0.2
2,649,979	+		LU632_RS13820	0.25	-2.4
2,650,014	+		LU632_RS13820	0.29	+0.1
2,650,014	-		LU632_RS13820	0.29	+3.3
2,650,017	+		LU632_RS13820	0.30	-0.8
2,650,108	-		LU632_RS13820	0.40	-0.2
2,650,144	-		LU632_RS13820	0.44	+0.2
2,650,166	-		LU632_RS13820	0.47	+2.1
2,650,212	+		LU632_RS13820	0.52	-1.5
2,650,252	+		LU632_RS13820	0.56	-0.5
2,650,252	+		LU632_RS13820	0.56	-0.4
2,650,253	-		LU632_RS13820	0.56	-0.6
2,650,255	-		LU632_RS13820	0.57	-0.2
2,650,259	-		LU632_RS13820	0.57	-0.4
2,650,456	-		LU632_RS13820	0.79	+0.8
2,650,461	+		LU632_RS13820	0.80	-1.0
2,650,462	-		LU632_RS13820	0.80	+0.1
2,650,507	-		LU632_RS13820	0.85	-0.2
2,650,593	+				-2.3
2,650,621	+				+0.6
2,650,636	+				-0.8
2,650,636	+				-1.9
2,650,637	-				+0.1
2,650,687	+				+0.3
2,650,688	-				+1.1
2,650,771	+				-0.6
2,650,804	+				-0.7
2,650,804	+				-0.9
2,650,805	-				-0.5
2,650,879	-				-0.8
2,650,879	-				-1.3
2,651,112	+				+0.4
2,651,137	+				+0.3
2,651,213	+				+0.2
2,651,250	+		LU632_RS13825	0.11	-1.0
2,651,250	+		LU632_RS13825	0.11	+0.7
2,651,251	-		LU632_RS13825	0.11	+0.9
2,651,305	+		LU632_RS13825	0.12	-1.5
2,651,441	-		LU632_RS13825	0.16	-1.5
2,651,467	+		LU632_RS13825	0.17	-1.1
2,651,551	+		LU632_RS13825	0.19	-1.1
2,651,552	-		LU632_RS13825	0.19	+0.2
2,651,552	-		LU632_RS13825	0.19	+0.1
2,651,560	+		LU632_RS13825	0.19	+0.5
2,651,585	+		LU632_RS13825	0.20	+2.1
2,651,602	+		LU632_RS13825	0.21	-1.5
2,651,603	-		LU632_RS13825	0.21	+0.5
2,651,603	-		LU632_RS13825	0.21	-0.6
2,651,604	+		LU632_RS13825	0.21	+0.1
2,651,604	+		LU632_RS13825	0.21	+0.1
2,651,604	+		LU632_RS13825	0.21	+0.8
2,651,605	-		LU632_RS13825	0.21	+1.4
2,651,605	-		LU632_RS13825	0.21	+1.0
2,651,620	-		LU632_RS13825	0.21	-0.5