Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13360

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,545,930	+				+0.3
2,546,014	-				+0.8
2,546,170	-		LU632_RS13355	0.31	-1.4
2,546,186	-		LU632_RS13355	0.33	-0.3
2,546,328	+		LU632_RS13355	0.55	+2.0
2,546,328	+		LU632_RS13355	0.55	-0.2
2,546,328	+		LU632_RS13355	0.55	-0.8
2,546,328	-		LU632_RS13355	0.55	-0.0
2,546,389	-		LU632_RS13355	0.65	-1.3
2,546,391	+		LU632_RS13355	0.65	+0.5
2,546,430	+		LU632_RS13355	0.71	-0.0
2,546,431	-		LU632_RS13355	0.71	+0.8
2,546,431	-		LU632_RS13355	0.71	+0.6
2,546,431	-		LU632_RS13355	0.71	-0.1
2,546,435	-		LU632_RS13355	0.72	-1.7
2,546,435	-		LU632_RS13355	0.72	-0.9
2,546,443	-		LU632_RS13355	0.73	+1.6
2,546,544	+		LU632_RS13355	0.89	+1.1
2,546,712	+				-1.0
2,546,713	-				-0.6
2,546,730	+				-2.9
2,546,793	+				+0.4
2,546,797	+				-0.6
2,546,798	-				+0.3
2,546,819	+				-1.2
2,546,843	+				+1.3
2,546,844	-				-1.0
2,547,024	-				-0.3
2,547,024	-				+0.8
2,547,159	+	zwf	LU632_RS13360	0.17	+0.6
2,547,160	-	zwf	LU632_RS13360	0.18	+0.8
2,547,160	-	zwf	LU632_RS13360	0.18	-1.2
2,547,160	-	zwf	LU632_RS13360	0.18	+1.7
2,547,185	+	zwf	LU632_RS13360	0.19	-0.5
2,547,185	+	zwf	LU632_RS13360	0.19	+1.1
2,547,296	+	zwf	LU632_RS13360	0.27	-1.3
2,547,377	-	zwf	LU632_RS13360	0.32	+2.4
2,547,408	+	zwf	LU632_RS13360	0.34	-0.1
2,547,408	+	zwf	LU632_RS13360	0.34	+0.9
2,547,411	-	zwf	LU632_RS13360	0.35	-0.4
2,547,453	-	zwf	LU632_RS13360	0.37	-0.7
2,547,548	+	zwf	LU632_RS13360	0.44	+2.9
2,547,632	+	zwf	LU632_RS13360	0.50	-3.4
2,547,632	+	zwf	LU632_RS13360	0.50	+0.3
2,547,633	-	zwf	LU632_RS13360	0.50	+0.0
2,547,633	-	zwf	LU632_RS13360	0.50	-1.7
2,547,675	-	zwf	LU632_RS13360	0.52	+0.6
2,547,704	-	zwf	LU632_RS13360	0.54	+1.0
2,547,816	+	zwf	LU632_RS13360	0.62	+0.2
2,547,844	+	zwf	LU632_RS13360	0.64	+1.1
2,547,899	+	zwf	LU632_RS13360	0.68	-2.3
2,547,926	+	zwf	LU632_RS13360	0.69	+2.0
2,547,927	-	zwf	LU632_RS13360	0.70	-0.4
2,547,930	+	zwf	LU632_RS13360	0.70	+1.1
2,548,031	-	zwf	LU632_RS13360	0.77	+0.1
2,548,035	-	zwf	LU632_RS13360	0.77	-2.9
2,548,035	-	zwf	LU632_RS13360	0.77	+0.1
2,548,067	+	zwf	LU632_RS13360	0.79	+0.6
2,548,110	-	zwf	LU632_RS13360	0.82	+1.1
2,548,375	+				-0.3
2,548,376	+				+1.1
2,548,377	-				+0.8
2,548,378	+				-0.1
2,548,378	+				+0.3
2,548,378	+				-0.6
2,548,379	-				+0.9
2,548,379	-				-1.4
2,548,434	+				+0.8
2,548,492	+				-1.1
2,548,577	+				-0.7
2,548,609	-				+1.9
2,548,655	+				+0.8
2,548,667	+				-0.8
2,548,667	+				+1.8
2,548,667	+				-2.2
2,548,668	-				-0.7
2,548,676	+				+0.9
2,548,677	-				+0.3
2,548,722	-				-1.7
2,549,021	-		LU632_RS13365	0.32	+0.4
2,549,074	+		LU632_RS13365	0.38	+0.1
2,549,226	+		LU632_RS13365	0.56	-0.0
2,549,226	+		LU632_RS13365	0.56	+6.3
2,549,254	-		LU632_RS13365	0.59	-1.9