Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13080

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,496,463	+		LU632_RS13075	0.41	+0.7
2,496,521	+		LU632_RS13075	0.44	-0.2
2,496,522	-		LU632_RS13075	0.44	-0.4
2,496,522	-		LU632_RS13075	0.44	-0.2
2,496,575	-		LU632_RS13075	0.48	+0.8
2,496,580	-		LU632_RS13075	0.48	+0.4
2,496,712	+		LU632_RS13075	0.57	-0.5
2,496,712	+		LU632_RS13075	0.57	-1.6
2,496,713	-		LU632_RS13075	0.57	+0.2
2,496,762	+		LU632_RS13075	0.60	+0.5
2,496,762	+		LU632_RS13075	0.60	+3.0
2,496,800	-		LU632_RS13075	0.63	-1.5
2,496,813	+		LU632_RS13075	0.63	-0.3
2,496,814	-		LU632_RS13075	0.63	+0.2
2,496,827	-		LU632_RS13075	0.64	-3.2
2,496,861	+		LU632_RS13075	0.67	+0.2
2,496,861	+		LU632_RS13075	0.67	-0.9
2,496,874	-		LU632_RS13075	0.67	-0.4
2,496,882	+		LU632_RS13075	0.68	+0.4
2,496,882	+		LU632_RS13075	0.68	+3.1
2,496,883	-		LU632_RS13075	0.68	-0.3
2,496,883	-		LU632_RS13075	0.68	+0.1
2,497,139	-		LU632_RS13075	0.85	-0.6
2,497,141	-		LU632_RS13075	0.85	-0.5
2,497,174	+		LU632_RS13075	0.87	-0.1
2,497,265	+				-1.9
2,497,337	+				+1.4
2,497,337	+				+0.4
2,497,338	-				+0.3
2,497,373	-				+0.4
2,497,425	-				+0.9
2,497,462	+				-0.3
2,497,462	+				+0.3
2,497,462	+				-0.2
2,497,462	+				-0.5
2,497,463	-				-1.7
2,497,463	-				-0.4
2,497,465	+				+5.9
2,497,465	+				+0.7
2,497,465	+				-0.4
2,497,466	-				-2.0
2,497,495	-				-2.3
2,497,560	+	fadR	LU632_RS13080	0.19	-0.0
2,497,602	+	fadR	LU632_RS13080	0.25	-0.3
2,497,602	+	fadR	LU632_RS13080	0.25	+0.8
2,497,603	-	fadR	LU632_RS13080	0.25	-2.3
2,497,656	+	fadR	LU632_RS13080	0.32	-1.0
2,497,697	-	fadR	LU632_RS13080	0.38	+1.1
2,497,714	+	fadR	LU632_RS13080	0.40	-1.2
2,497,717	-	fadR	LU632_RS13080	0.41	+0.4
2,497,717	-	fadR	LU632_RS13080	0.41	-0.9
2,497,816	+	fadR	LU632_RS13080	0.55	+2.4
2,497,816	+	fadR	LU632_RS13080	0.55	+1.5
2,497,817	-	fadR	LU632_RS13080	0.55	-2.6
2,497,897	+	fadR	LU632_RS13080	0.66	-1.0
2,497,985	+	fadR	LU632_RS13080	0.78	+0.0
2,497,985	+	fadR	LU632_RS13080	0.78	+0.5
2,498,095	-				-0.2
2,498,183	+				+1.0
2,498,348	+				+1.2
2,498,429	+				-0.5
2,498,429	+				-3.0
2,498,429	+				-0.4
2,498,503	-	dsbB	LU632_RS13085	0.11	-0.2
2,498,574	+	dsbB	LU632_RS13085	0.25	+0.1
2,498,574	+	dsbB	LU632_RS13085	0.25	+0.1
2,498,575	-	dsbB	LU632_RS13085	0.25	+2.7
2,498,729	+	dsbB	LU632_RS13085	0.54	+1.1
2,498,746	-	dsbB	LU632_RS13085	0.57	+1.5
2,498,793	+	dsbB	LU632_RS13085	0.66	+0.1
2,498,794	-	dsbB	LU632_RS13085	0.66	+0.3
2,498,897	+	dsbB	LU632_RS13085	0.85	-0.3
2,498,902	-	dsbB	LU632_RS13085	0.86	-1.2
2,498,902	-	dsbB	LU632_RS13085	0.86	+2.4
2,499,013	+				-0.0
2,499,014	-				-1.0
2,499,034	+				-0.1
2,499,036	+				+0.8
2,499,036	+				+0.9
2,499,036	+				+0.4
2,499,052	+				-0.9
2,499,103	-				-0.2