Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12840

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,441,795	-		LU632_RS12830	0.87	-2.5
2,441,829	-				-2.4
2,441,892	-				+0.4
2,441,892	-				-0.8
2,441,903	+				+1.5
2,441,904	-				-0.0
2,441,906	-				+0.7
2,441,906	-				-0.5
2,441,906	-				-0.9
2,441,906	-				+0.7
2,441,910	-				-2.1
2,441,925	+				-0.0
2,441,935	+				+0.2
2,441,995	+				+1.1
2,442,048	-				+0.2
2,442,080	-				-0.7
2,442,111	+				-1.2
2,442,112	-				-0.6
2,442,184	+		LU632_RS12835	0.30	+0.5
2,442,185	-		LU632_RS12835	0.30	-0.2
2,442,209	+		LU632_RS12835	0.38	+0.0
2,442,279	-		LU632_RS12835	0.62	+0.1
2,442,334	-		LU632_RS12835	0.80	+0.5
2,442,334	-		LU632_RS12835	0.80	-2.1
2,442,454	+				+0.9
2,442,494	-				-2.6
2,442,494	-				-0.1
2,442,498	-				-3.0
2,442,593	+				+0.9
2,442,900	+		LU632_RS12840	0.19	+0.6
2,442,915	+		LU632_RS12840	0.20	+2.2
2,442,987	+		LU632_RS12840	0.25	+0.6
2,443,098	+		LU632_RS12840	0.34	+0.9
2,443,366	+		LU632_RS12840	0.55	+0.7
2,443,367	-		LU632_RS12840	0.55	-0.7
2,443,367	-		LU632_RS12840	0.55	+0.2
2,443,399	-		LU632_RS12840	0.57	+5.1
2,443,449	+		LU632_RS12840	0.61	+0.6
2,443,522	+		LU632_RS12840	0.67	+4.4
2,443,528	-		LU632_RS12840	0.68	-0.0
2,443,563	+		LU632_RS12840	0.70	+1.8
2,443,654	-		LU632_RS12840	0.77	-0.0
2,443,654	-		LU632_RS12840	0.77	-0.4
2,443,764	+		LU632_RS12840	0.86	-1.3
2,443,943	-				+1.0