Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11955

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,264,487	+		LU632_RS11950	0.71	-0.4
2,264,488	-		LU632_RS11950	0.71	+0.4
2,264,488	-		LU632_RS11950	0.71	-1.3
2,264,492	-		LU632_RS11950	0.71	+0.6
2,264,561	+		LU632_RS11950	0.73	-1.2
2,264,848	-		LU632_RS11950	0.83	-1.1
2,264,862	-		LU632_RS11950	0.83	-1.1
2,264,917	+		LU632_RS11950	0.85	-1.1
2,264,918	-		LU632_RS11950	0.85	-0.9
2,264,926	-		LU632_RS11950	0.86	+1.9
2,264,945	+		LU632_RS11950	0.86	-0.9
2,264,946	-		LU632_RS11950	0.86	-2.5
2,264,946	-		LU632_RS11950	0.86	-2.9
2,264,961	-		LU632_RS11950	0.87	-0.7
2,265,016	-		LU632_RS11950	0.89	-1.8
2,265,044	+		LU632_RS11950	0.89	-0.5
2,265,077	+				-0.7
2,265,078	-				-0.9
2,265,078	-				-0.9
2,265,078	-				-0.4
2,265,078	-				-1.4
2,265,109	+				-1.6
2,265,250	-				-1.1
2,265,288	+				+0.8
2,265,288	+				-1.9
2,265,289	-				-1.9
2,265,289	-				+0.5
2,265,345	-				-0.1
2,265,346	+				-0.0
2,265,346	+				+0.5
2,265,346	+				-1.9
2,265,347	-				-1.6
2,265,347	-				-0.4
2,265,379	+				+0.4
2,265,380	-				-0.3
2,265,603	+		LU632_RS11955	0.10	+0.0
2,265,603	+		LU632_RS11955	0.10	-0.2
2,265,676	-		LU632_RS11955	0.13	+6.9
2,265,749	+		LU632_RS11955	0.17	+0.1
2,265,804	-		LU632_RS11955	0.19	-1.5
2,265,816	+		LU632_RS11955	0.19	-0.9
2,265,817	-		LU632_RS11955	0.19	-2.1
2,265,878	+		LU632_RS11955	0.22	-0.0
2,265,879	-		LU632_RS11955	0.22	-0.6
2,266,069	+		LU632_RS11955	0.30	-0.7
2,266,123	+		LU632_RS11955	0.32	+0.6
2,266,123	+		LU632_RS11955	0.32	-0.9
2,266,124	-		LU632_RS11955	0.32	-0.4
2,266,124	-		LU632_RS11955	0.32	-1.8
2,266,124	-		LU632_RS11955	0.32	-0.9
2,266,190	-		LU632_RS11955	0.35	-2.8
2,266,315	+		LU632_RS11955	0.40	-1.5
2,266,320	-		LU632_RS11955	0.40	+0.3
2,266,503	+		LU632_RS11955	0.48	+1.1
2,266,554	-		LU632_RS11955	0.50	-1.5
2,266,643	+		LU632_RS11955	0.54	-0.5
2,266,643	+		LU632_RS11955	0.54	+0.5
2,266,644	-		LU632_RS11955	0.54	+1.5
2,266,673	+		LU632_RS11955	0.55	-0.2
2,266,673	+		LU632_RS11955	0.55	-0.3
2,266,673	+		LU632_RS11955	0.55	-0.7
2,266,673	+		LU632_RS11955	0.55	+0.1
2,266,674	-		LU632_RS11955	0.55	+1.6
2,266,674	-		LU632_RS11955	0.55	+0.1
2,266,676	+		LU632_RS11955	0.55	-2.1
2,266,957	+		LU632_RS11955	0.67	+0.5
2,267,073	+		LU632_RS11955	0.72	-1.0
2,267,073	+		LU632_RS11955	0.72	+0.1
2,267,074	-		LU632_RS11955	0.72	+3.4
2,267,074	-		LU632_RS11955	0.72	-1.6
2,267,074	-		LU632_RS11955	0.72	-1.1
2,267,109	-		LU632_RS11955	0.73	+0.5
2,267,114	+		LU632_RS11955	0.74	+0.1
2,267,212	-		LU632_RS11955	0.78	-0.6
2,267,218	-		LU632_RS11955	0.78	-0.3
2,267,225	+		LU632_RS11955	0.78	-0.9
2,267,233	+		LU632_RS11955	0.79	-1.5
2,267,242	+		LU632_RS11955	0.79	+2.1
2,267,282	+		LU632_RS11955	0.81	-2.1
2,267,380	+		LU632_RS11955	0.85	-0.4
2,267,381	-		LU632_RS11955	0.85	-0.1
2,267,381	-		LU632_RS11955	0.85	-0.0
2,267,502	-		LU632_RS11955	0.90	+0.6
2,267,622	+				-0.3
2,267,622	+				+0.7
2,267,622	+				-1.1
2,267,623	-				-0.4
2,267,623	-				+0.8
2,267,632	+				+0.1
2,267,832	+				+3.5
2,268,018	-				+1.9
2,268,158	+				+1.4
2,268,202	+				+0.6
2,268,202	+				-0.5
2,268,203	-				+0.9
2,268,226	+				-1.1
2,268,226	+				-0.5
2,268,229	+				-0.1
2,268,229	+				+0.0
2,268,235	-				+0.2
2,268,235	-				-0.9
2,268,269	+				-1.6
2,268,319	+				+0.1
2,268,320	-				-0.1
2,268,320	-				-2.3
2,268,487	+		LU632_RS11960	0.20	+0.5
2,268,487	+		LU632_RS11960	0.20	+0.7
2,268,488	-		LU632_RS11960	0.21	+0.2
2,268,488	-		LU632_RS11960	0.21	-0.8
2,268,567	-		LU632_RS11960	0.26	-0.9
2,268,682	+		LU632_RS11960	0.35	+1.3
2,268,682	+		LU632_RS11960	0.35	+0.8
2,268,683	-		LU632_RS11960	0.35	-0.9