Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11860

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,247,886	+				+0.8
2,247,886	+				+0.7
2,247,948	+				-0.5
2,247,949	-				+0.6
2,247,961	-				-1.1
2,247,961	-				+1.0
2,247,969	+				+0.9
2,247,983	+				-0.4
2,247,984	-				+1.6
2,247,987	+				-1.0
2,247,988	-				+2.4
2,248,037	+				-1.9
2,248,037	+				-1.6
2,248,051	+				+1.5
2,248,064	+		LU632_RS11855	0.10	-0.3
2,248,065	-		LU632_RS11855	0.10	-2.5
2,248,065	-		LU632_RS11855	0.10	-0.2
2,248,065	-		LU632_RS11855	0.10	+0.6
2,248,068	+		LU632_RS11855	0.11	-1.3
2,248,069	-		LU632_RS11855	0.11	+2.0
2,248,069	-		LU632_RS11855	0.11	+0.2
2,248,073	+		LU632_RS11855	0.12	-2.1
2,248,170	+		LU632_RS11855	0.30	-0.8
2,248,170	+		LU632_RS11855	0.30	+0.3
2,248,170	+		LU632_RS11855	0.30	+0.8
2,248,171	-		LU632_RS11855	0.30	-0.6
2,248,176	-		LU632_RS11855	0.31	+0.1
2,248,176	-		LU632_RS11855	0.31	+0.5
2,248,313	+		LU632_RS11855	0.57	-2.4
2,248,314	-		LU632_RS11855	0.57	+0.6
2,248,332	+		LU632_RS11855	0.61	-0.4
2,248,333	-		LU632_RS11855	0.61	+0.1
2,248,354	-		LU632_RS11855	0.65	-0.0
2,248,444	+		LU632_RS11855	0.82	-1.1
2,248,445	-		LU632_RS11855	0.82	-1.1
2,248,474	-		LU632_RS11855	0.88	-3.7
2,248,536	-				-0.5
2,248,579	+				+0.5
2,248,615	+				+2.7
2,248,671	-				-0.5
2,248,719	+				-1.4
2,248,721	+				-0.5
2,248,722	-				-2.8
2,248,739	+		LU632_RS11860	0.13	-1.0
2,248,740	-		LU632_RS11860	0.13	+0.1
2,248,754	-		LU632_RS11860	0.16	-1.1
2,248,757	+		LU632_RS11860	0.17	-1.8
2,248,946	-		LU632_RS11860	0.58	+0.1
2,248,946	-		LU632_RS11860	0.58	-1.7
2,248,975	-		LU632_RS11860	0.64	-0.6
2,248,985	+		LU632_RS11860	0.66	-2.0
2,249,349	+				+1.2
2,249,395	+				+1.1
2,249,396	-				+1.3
2,249,396	-				-0.3
2,249,396	-				-0.1
2,249,529	-				-2.1
2,249,634	+		LU632_RS11870	0.13	+1.1
2,249,708	+		LU632_RS11870	0.28	+1.1
2,249,708	+		LU632_RS11870	0.28	-1.7
2,249,754	+		LU632_RS11870	0.38	+0.8
2,249,755	-		LU632_RS11870	0.38	-2.3
2,249,790	+		LU632_RS11870	0.45	+0.2
2,249,790	+		LU632_RS11870	0.45	+1.8
2,249,790	+		LU632_RS11870	0.45	-0.0
2,249,791	-		LU632_RS11870	0.45	-0.2
2,249,796	-		LU632_RS11870	0.46	-0.4
2,249,845	-		LU632_RS11870	0.57	+0.5
2,249,846	+		LU632_RS11870	0.57	+1.1
2,249,937	-		LU632_RS11870	0.76	+0.2
2,249,991	+		LU632_RS11870	0.87	-0.6
2,249,992	-		LU632_RS11870	0.87	+0.5
2,249,997	+		LU632_RS11870	0.88	+0.6
2,249,997	+		LU632_RS11870	0.88	+0.1
2,250,039	-				-3.3
2,250,039	-				-0.2