Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11815

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,243,703	+	terL	LU632_RS11805	0.56	-0.2
2,243,704	-	terL	LU632_RS11805	0.56	-0.7
2,244,009	+	terL	LU632_RS11805	0.74	+0.2
2,244,222	+	terL	LU632_RS11805	0.87	+0.1
2,244,223	-	terL	LU632_RS11805	0.87	-0.4
2,244,223	-	terL	LU632_RS11805	0.87	-2.8
2,244,270	+	terL	LU632_RS11805	0.89	+0.7
2,244,271	-	terL	LU632_RS11805	0.89	-1.3
2,244,271	-	terL	LU632_RS11805	0.89	+0.0
2,244,275	-	terL	LU632_RS11805	0.90	-0.5
2,244,450	+				-0.7
2,244,450	+				-0.9
2,244,451	-				-0.2
2,244,451	-				+1.2
2,244,451	-				+1.2
2,244,451	-				-0.2
2,244,451	-				-0.8
2,244,580	-		LU632_RS11810	0.52	+3.3
2,244,589	+		LU632_RS11810	0.56	-0.7
2,244,590	-		LU632_RS11810	0.57	-2.6
2,244,590	-		LU632_RS11810	0.57	+1.5
2,244,605	-		LU632_RS11810	0.63	+0.6
2,244,605	-		LU632_RS11810	0.63	-0.3
2,244,605	-		LU632_RS11810	0.63	-0.5
2,244,607	-		LU632_RS11810	0.64	-0.7
2,244,675	-				-1.5
2,244,703	+				-0.5
2,244,704	-				+0.2
2,244,704	-				-0.7
2,244,722	-				-0.4
2,244,724	+				+0.2
2,244,724	+				-0.1
2,244,725	-				-0.2
2,244,725	-				-0.2
2,244,756	-		LU632_RS11815	0.14	+2.1
2,244,759	+		LU632_RS11815	0.15	+0.6
2,244,893	+		LU632_RS11815	0.40	+0.1
2,244,894	-		LU632_RS11815	0.41	-0.3
2,244,966	+		LU632_RS11815	0.54	-2.0
2,245,160	+				-1.9
2,245,161	-				+0.7
2,245,161	-				+1.3
2,245,161	-				+0.5
2,245,236	+		LU632_RS11820	0.13	-0.4
2,245,236	+		LU632_RS11820	0.13	+0.1
2,245,238	+		LU632_RS11820	0.14	+0.1
2,245,339	+		LU632_RS11820	0.55	-1.3
2,245,340	-		LU632_RS11820	0.55	-1.1
2,245,415	+		LU632_RS11820	0.85	+0.8
2,245,472	-				+0.8
2,245,472	-				-1.7
2,245,606	+		LU632_RS11825	0.60	-0.4
2,245,662	-				+0.4
2,245,724	+		LU632_RS11830	0.13	+0.1
2,245,725	-		LU632_RS11830	0.14	+0.8
2,246,115	+				+0.6
2,246,115	+				-0.3
2,246,115	+				-0.1
2,246,116	-				-0.4
2,246,116	-				+1.8