Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11300

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,158,352	+				-0.2
2,158,412	+				-1.1
2,158,419	+				-1.0
2,158,424	+				+0.5
2,158,454	+				+0.7
2,158,589	+		LU632_RS11295	0.13	+0.4
2,158,616	+		LU632_RS11295	0.17	-0.1
2,158,617	-		LU632_RS11295	0.17	+0.1
2,158,718	+		LU632_RS11295	0.32	+2.1
2,158,745	+		LU632_RS11295	0.36	+3.9
2,158,745	+		LU632_RS11295	0.36	+0.7
2,158,745	+		LU632_RS11295	0.36	-0.5
2,158,745	+		LU632_RS11295	0.36	+0.0
2,158,746	-		LU632_RS11295	0.36	-0.9
2,158,746	-		LU632_RS11295	0.36	-0.3
2,158,746	-		LU632_RS11295	0.36	-1.7
2,158,746	-		LU632_RS11295	0.36	+0.5
2,158,746	-		LU632_RS11295	0.36	+0.6
2,158,746	-		LU632_RS11295	0.36	-0.1
2,158,746	-		LU632_RS11295	0.36	+0.1
2,158,746	-		LU632_RS11295	0.36	-0.3
2,158,833	-		LU632_RS11295	0.49	-0.5
2,158,919	+		LU632_RS11295	0.62	+0.3
2,158,996	-		LU632_RS11295	0.73	-2.1
2,159,135	+				+0.3
2,159,136	-				-0.9
2,159,184	+				+0.1
2,159,245	+				-0.7
2,159,245	+				+1.1
2,159,246	-				-1.5
2,159,325	+				+1.8
2,159,423	-		LU632_RS11300	0.25	+1.6
2,159,513	+		LU632_RS11300	0.40	-0.2
2,159,518	-		LU632_RS11300	0.41	-0.4
2,159,518	-		LU632_RS11300	0.41	+1.1
2,159,518	-		LU632_RS11300	0.41	-0.2
2,159,580	-		LU632_RS11300	0.52	-1.7
2,159,613	+		LU632_RS11300	0.58	-0.6
2,159,614	-		LU632_RS11300	0.58	+1.3
2,159,631	+		LU632_RS11300	0.61	-0.1
2,159,631	+		LU632_RS11300	0.61	-1.6
2,159,632	-		LU632_RS11300	0.61	+1.1
2,159,632	-		LU632_RS11300	0.61	+0.5
2,159,635	+		LU632_RS11300	0.62	-0.5
2,159,694	+		LU632_RS11300	0.72	+1.1
2,159,695	-		LU632_RS11300	0.72	+0.1
2,159,699	-		LU632_RS11300	0.73	-2.7
2,159,853	+				+0.8
2,159,854	-				-2.2
2,159,854	-				-0.2
2,159,854	-				-1.2
2,159,860	+				+2.4
2,159,950	+				+0.2
2,159,951	-				-1.9
2,159,951	-				+0.3
2,159,972	+				-0.4
2,159,972	+				+1.1
2,160,026	-				-1.6
2,160,098	+				-0.3
2,160,126	+				-0.2
2,160,229	+				-2.1
2,160,256	+	nth	LU632_RS11305	0.12	-0.9
2,160,257	-	nth	LU632_RS11305	0.12	-0.5
2,160,257	-	nth	LU632_RS11305	0.12	-0.4
2,160,258	+	nth	LU632_RS11305	0.12	-1.5
2,160,258	+	nth	LU632_RS11305	0.12	+0.8
2,160,298	+	nth	LU632_RS11305	0.19	-0.0
2,160,299	-	nth	LU632_RS11305	0.19	-0.8
2,160,446	-	nth	LU632_RS11305	0.42	-0.1
2,160,541	+	nth	LU632_RS11305	0.57	-1.1
2,160,541	+	nth	LU632_RS11305	0.57	-0.1
2,160,588	+	nth	LU632_RS11305	0.65	-1.0
2,160,799	+				+0.5
2,160,800	-				+0.3
2,160,806	-				-1.7
2,160,811	+				+1.8
2,160,825	+				+1.7