Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11285

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,156,438	+				+1.1
2,156,438	+				-2.2
2,156,439	-				-2.0
2,156,533	+				+0.1
2,156,600	+				-0.6
2,156,662	+	gstA	LU632_RS11280	0.11	+0.0
2,156,662	+	gstA	LU632_RS11280	0.11	-0.9
2,156,663	-	gstA	LU632_RS11280	0.11	+0.5
2,156,663	-	gstA	LU632_RS11280	0.11	+0.1
2,156,717	+	gstA	LU632_RS11280	0.20	-0.7
2,156,985	+	gstA	LU632_RS11280	0.64	-0.0
2,156,985	+	gstA	LU632_RS11280	0.64	+3.4
2,156,985	+	gstA	LU632_RS11280	0.64	-2.9
2,156,986	-	gstA	LU632_RS11280	0.65	-0.5
2,156,986	-	gstA	LU632_RS11280	0.65	-0.3
2,156,991	-	gstA	LU632_RS11280	0.65	+1.3
2,157,061	+	gstA	LU632_RS11280	0.77	-1.4
2,157,066	-	gstA	LU632_RS11280	0.78	-0.1
2,157,066	-	gstA	LU632_RS11280	0.78	+0.1
2,157,147	-				-1.2
2,157,147	-				+1.1
2,157,187	-				+0.6
2,157,291	+				-0.3
2,157,311	+				+2.1
2,157,311	+				-0.5
2,157,356	-				+1.1
2,157,359	-				-0.1
2,157,359	-				-1.3
2,157,359	-				-1.0
2,157,366	+				+0.2
2,157,366	+				+2.0
2,157,367	-				-1.2
2,157,477	+		LU632_RS11285	0.49	-0.5
2,157,530	+		LU632_RS11285	0.86	-0.6
2,157,589	+				+2.6
2,157,589	+				-0.9
2,157,590	-				-1.6
2,157,590	-				+0.1
2,157,590	-				-0.3
2,157,590	-				+1.5
2,157,591	+				+0.4
2,157,591	+				-1.2
2,157,593	+				-0.1
2,157,594	-				+0.7
2,157,594	-				-1.2
2,157,744	+		LU632_RS11290	0.26	+0.7
2,157,787	-		LU632_RS11290	0.31	-0.8
2,157,914	-		LU632_RS11290	0.48	-0.1
2,157,975	+		LU632_RS11290	0.56	+2.5
2,157,975	+		LU632_RS11290	0.56	+0.7
2,158,021	-		LU632_RS11290	0.63	+0.1
2,158,027	-		LU632_RS11290	0.63	-1.7
2,158,142	-		LU632_RS11290	0.79	+0.9
2,158,203	-		LU632_RS11290	0.87	-1.2
2,158,352	+				-0.2
2,158,412	+				-1.1
2,158,419	+				-1.0
2,158,424	+				+0.5
2,158,454	+				+0.7