Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11145

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,132,820	+				+1.1
2,132,820	+				-0.6
2,132,834	+				+0.4
2,133,530	-				-2.2
2,133,666	+				+1.2
2,133,675	+				+1.6
2,133,686	+				+0.5
2,133,845	-	pykF	LU632_RS11145	0.12	-0.5
2,133,859	+	pykF	LU632_RS11145	0.13	-0.7
2,133,919	-	pykF	LU632_RS11145	0.17	-3.1
2,133,919	-	pykF	LU632_RS11145	0.17	+0.4
2,133,919	-	pykF	LU632_RS11145	0.17	+1.1
2,133,922	+	pykF	LU632_RS11145	0.18	-0.9
2,134,036	+	pykF	LU632_RS11145	0.26	+2.8
2,134,445	-	pykF	LU632_RS11145	0.55	-2.3
2,134,613	+	pykF	LU632_RS11145	0.66	-2.2
2,134,763	-	pykF	LU632_RS11145	0.77	-2.1
2,134,814	-	pykF	LU632_RS11145	0.81	-1.9
2,134,814	-	pykF	LU632_RS11145	0.81	-1.7
2,134,942	+	pykF	LU632_RS11145	0.90	-0.7
2,135,006	-				+0.4
2,135,095	-				-1.2
2,135,101	+				-1.8
2,135,240	-		LU632_RS11150	0.76	+3.3
2,135,324	+				-1.9
2,135,374	+				-0.8
2,135,452	+		LU632_RS11155	0.13	-0.3
2,135,510	+		LU632_RS11155	0.88	-0.8
2,135,882	-				-2.6
2,135,890	+				-0.7
2,135,933	-				+0.9
2,135,997	+		LU632_RS11170	0.12	-1.0
2,136,025	+		LU632_RS11170	0.14	-0.5
2,136,037	+		LU632_RS11170	0.15	+0.1
2,136,050	-		LU632_RS11170	0.16	-1.1