Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10865

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
2,073,082	+				-0.9
2,073,082	+				+0.2
2,073,082	+				+0.1
2,073,166	+				+0.1
2,073,190	+				-0.3
2,073,191	-				-0.0
2,073,228	-				-2.0
2,073,228	-				+0.3
2,073,228	-				-0.0
2,073,228	-				+1.0
2,073,229	+				-0.5
2,073,229	+				-1.2
2,073,229	+				-0.7
2,073,229	+				+1.3
2,073,229	+				+2.1
2,073,230	-				-0.5
2,073,232	-				-0.2
2,073,232	-				-0.2
2,073,232	-				+0.0
2,073,297	+				-0.3
2,073,333	+				-0.7
2,073,334	-				-1.7
2,073,334	-				-2.0
2,073,334	-				+0.1
2,073,511	-		LU632_RS10860	0.40	-0.5
2,073,516	-		LU632_RS10860	0.41	+0.9
2,073,527	+		LU632_RS10860	0.42	+0.6
2,073,767	+		LU632_RS10860	0.83	+0.7
2,073,801	-		LU632_RS10860	0.89	+0.5
2,073,866	+				+1.0
2,073,870	+				-0.6
2,073,870	+				+1.0
2,073,871	-				-0.2
2,073,871	-				-2.7
2,073,871	-				+3.1
2,073,871	-				-0.6
2,073,926	+				-2.7
2,074,005	+				+0.7
2,074,006	-				+0.3
2,074,399	-	hxpB	LU632_RS10865	0.61	+2.2
2,074,399	-	hxpB	LU632_RS10865	0.61	+2.0
2,074,399	-	hxpB	LU632_RS10865	0.61	-1.9
2,074,402	+	hxpB	LU632_RS10865	0.62	-0.3
2,074,402	+	hxpB	LU632_RS10865	0.62	+0.6
2,074,403	-	hxpB	LU632_RS10865	0.62	+1.0
2,074,403	-	hxpB	LU632_RS10865	0.62	-0.9
2,074,403	-	hxpB	LU632_RS10865	0.62	+0.2
2,074,403	-	hxpB	LU632_RS10865	0.62	+0.1
2,074,407	+	hxpB	LU632_RS10865	0.63	-0.4
2,074,407	+	hxpB	LU632_RS10865	0.63	+0.9
2,074,408	-	hxpB	LU632_RS10865	0.63	+2.3
2,074,687	+				-0.9
2,074,777	+				+3.0
2,074,777	+				+0.4
2,074,778	-				-0.4
2,074,814	+				-1.9
2,074,850	-				-0.4
2,074,852	+				-1.0
2,074,975	-		LU632_RS10870	0.31	-2.6
2,074,975	-		LU632_RS10870	0.31	-1.9
2,074,984	+		LU632_RS10870	0.33	+0.5
2,074,985	-		LU632_RS10870	0.33	+0.7
2,074,985	-		LU632_RS10870	0.33	+0.5
2,074,996	+		LU632_RS10870	0.35	-0.5
2,075,048	-		LU632_RS10870	0.44	-3.0
2,075,063	-		LU632_RS10870	0.47	+0.5
2,075,078	-		LU632_RS10870	0.50	+0.1
2,075,110	-		LU632_RS10870	0.56	-0.7
2,075,153	-		LU632_RS10870	0.64	-0.8
2,075,300	-				+1.5
2,075,338	+				-0.1
2,075,450	-				-0.6
2,075,451	+				-0.6
2,075,452	-				+0.3
2,075,452	-				-0.1
2,075,506	+				-0.5
2,075,520	+				-1.5
2,075,558	-				+1.3
2,075,610	+				+0.0
2,075,615	-				+0.3
2,075,630	-				+1.0
2,075,630	-				+0.2
2,075,632	+				+1.1
2,075,633	-				-1.4