Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10315

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,970,445	+		LU632_RS10310	0.47	-0.3
1,970,445	+		LU632_RS10310	0.47	-1.9
1,970,445	+		LU632_RS10310	0.47	-1.2
1,970,446	-		LU632_RS10310	0.47	-1.8
1,970,447	+		LU632_RS10310	0.48	-0.4
1,970,447	+		LU632_RS10310	0.48	+1.0
1,970,447	+		LU632_RS10310	0.48	+0.2
1,970,447	+		LU632_RS10310	0.48	-0.9
1,970,448	-		LU632_RS10310	0.48	+1.4
1,970,459	+		LU632_RS10310	0.50	+0.2
1,970,459	+		LU632_RS10310	0.50	+0.4
1,970,494	-		LU632_RS10310	0.56	+0.3
1,970,547	-		LU632_RS10310	0.66	-2.1
1,970,569	+		LU632_RS10310	0.70	-0.2
1,970,581	+		LU632_RS10310	0.72	+0.2
1,970,582	-		LU632_RS10310	0.72	+0.4
1,970,582	-		LU632_RS10310	0.72	-0.2
1,970,582	-		LU632_RS10310	0.72	+1.0
1,970,616	+		LU632_RS10310	0.78	+0.0
1,970,616	+		LU632_RS10310	0.78	-1.7
1,970,617	-		LU632_RS10310	0.78	+1.7
1,970,661	-		LU632_RS10310	0.86	-0.5
1,970,687	+				-0.5
1,970,690	+				+1.3
1,970,691	-				+0.2
1,970,691	-				+1.2
1,970,693	+				+0.1
1,970,693	+				+1.5
1,970,694	-				+2.2
1,970,703	+				+0.4
1,970,703	+				-0.4
1,970,703	+				+1.4
1,970,703	+				+1.1
1,970,703	+				+0.8
1,970,703	+				+0.3
1,970,703	+				-0.6
1,970,704	-				-0.8
1,970,704	-				+0.2
1,970,801	-				-0.1
1,971,075	-				-0.1
1,971,090	+				+0.8
1,971,202	+				-0.8
1,971,203	-				+0.4
1,971,231	+				+1.5
1,971,256	-				-1.8
1,971,300	+				+0.2
1,971,301	-				+4.1
1,971,365	+				-1.1
1,971,366	-				-0.2
1,971,366	-				-1.2
1,971,366	-				+0.1
1,971,443	+				+0.8
1,971,449	+				+1.7
1,971,450	-				+0.9
1,971,767	+		LU632_RS10315	0.30	+1.2
1,971,768	-		LU632_RS10315	0.30	+2.7
1,971,799	+		LU632_RS10315	0.33	-0.7
1,971,844	+		LU632_RS10315	0.37	+2.9
1,971,844	+		LU632_RS10315	0.37	-2.7
1,971,845	-		LU632_RS10315	0.37	+0.8
1,971,845	-		LU632_RS10315	0.37	+1.1
1,971,846	+		LU632_RS10315	0.37	-0.5
1,971,846	+		LU632_RS10315	0.37	+0.6
1,971,846	+		LU632_RS10315	0.37	-0.2
1,971,846	+		LU632_RS10315	0.37	+0.3
1,971,846	+		LU632_RS10315	0.37	+1.2
1,971,847	-		LU632_RS10315	0.37	+1.1
1,971,847	-		LU632_RS10315	0.37	+0.1
1,971,847	-		LU632_RS10315	0.37	+0.3
1,971,857	-		LU632_RS10315	0.38	+0.9
1,971,887	+		LU632_RS10315	0.41	+0.9
1,971,887	+		LU632_RS10315	0.41	+0.5
1,971,887	+		LU632_RS10315	0.41	-0.4
1,971,888	-		LU632_RS10315	0.41	-1.8
1,971,888	-		LU632_RS10315	0.41	+0.6
1,971,888	-		LU632_RS10315	0.41	-0.7
1,971,982	-		LU632_RS10315	0.49	+1.6
1,972,071	+		LU632_RS10315	0.56	+1.2
1,972,071	+		LU632_RS10315	0.56	-0.6
1,972,072	-		LU632_RS10315	0.56	-1.6
1,972,072	-		LU632_RS10315	0.56	+0.1
1,972,073	+		LU632_RS10315	0.56	+0.2
1,972,073	+		LU632_RS10315	0.56	-0.8
1,972,073	+		LU632_RS10315	0.56	-2.0
1,972,073	+		LU632_RS10315	0.56	+0.6
1,972,074	-		LU632_RS10315	0.57	-0.2
1,972,144	-		LU632_RS10315	0.63	-1.8
1,972,174	-		LU632_RS10315	0.65	+1.1
1,972,276	+		LU632_RS10315	0.74	+0.2
1,972,277	-		LU632_RS10315	0.74	+0.1
1,972,307	-		LU632_RS10315	0.77	+0.5
1,972,391	-		LU632_RS10315	0.84	+0.3
1,972,579	-				-1.2
1,972,609	-				+1.9
1,972,696	+				+0.8
1,972,839	+	solA	LU632_RS10320	0.15	-0.0
1,972,857	-	solA	LU632_RS10320	0.17	-0.0
1,972,981	-	solA	LU632_RS10320	0.28	-0.5
1,973,042	+	solA	LU632_RS10320	0.34	+0.4
1,973,042	+	solA	LU632_RS10320	0.34	+0.5
1,973,043	-	solA	LU632_RS10320	0.34	-1.1
1,973,066	-	solA	LU632_RS10320	0.36	+0.2
1,973,191	+	solA	LU632_RS10320	0.47	-0.6
1,973,275	-	solA	LU632_RS10320	0.54	-2.4
1,973,281	-	solA	LU632_RS10320	0.55	+1.2
1,973,281	-	solA	LU632_RS10320	0.55	-1.9
1,973,281	-	solA	LU632_RS10320	0.55	+0.8
1,973,438	-	solA	LU632_RS10320	0.69	+1.8