Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09955

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,900,546	+	ssuE	LU632_RS09950	0.22	-0.0
1,900,569	-	ssuE	LU632_RS09950	0.26	-1.9
1,900,640	+	ssuE	LU632_RS09950	0.39	+0.2
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.2
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.5
1,900,641	-	ssuE	LU632_RS09950	0.39	-3.5
1,900,641	-	ssuE	LU632_RS09950	0.39	+0.0
1,900,641	-	ssuE	LU632_RS09950	0.39	-1.1
1,900,641	-	ssuE	LU632_RS09950	0.39	+1.2
1,900,681	+	ssuE	LU632_RS09950	0.47	-1.9
1,900,726	-	ssuE	LU632_RS09950	0.55	+0.0
1,900,740	+	ssuE	LU632_RS09950	0.58	-1.3
1,900,849	+	ssuE	LU632_RS09950	0.78	+0.3
1,900,852	-	ssuE	LU632_RS09950	0.78	-0.8
1,900,853	+	ssuE	LU632_RS09950	0.79	-1.2
1,900,854	-	ssuE	LU632_RS09950	0.79	-0.5
1,900,957	-				+0.3
1,900,960	-				+0.2
1,900,973	-				-0.2
1,901,023	+				+0.6
1,901,050	+				+0.4
1,901,050	+				+3.2
1,901,088	+				+1.2
1,901,088	+				+2.7
1,901,092	+				+0.4
1,901,092	+				-1.9
1,901,100	+				-0.4
1,901,131	+				+0.7
1,901,230	+				-0.4
1,901,230	+				+0.0
1,901,231	-				-1.1
1,901,307	+				-1.8
1,901,307	+				+0.9
1,901,308	-				-1.8
1,901,308	-				-0.4
1,901,352	+				-0.8
1,901,353	-				-1.6
1,901,353	-				-1.7
1,901,353	-				-3.8
1,901,353	-				-0.8
1,901,354	+				-1.1
1,901,438	+				-2.4
1,901,477	+	pyrD	LU632_RS09955	0.13	-0.7
1,901,555	+	pyrD	LU632_RS09955	0.21	-1.9
1,901,555	+	pyrD	LU632_RS09955	0.21	-1.9
1,901,556	-	pyrD	LU632_RS09955	0.21	-1.6
1,901,631	-	pyrD	LU632_RS09955	0.28	-2.5
1,901,634	-	pyrD	LU632_RS09955	0.28	-3.6
1,901,749	+	pyrD	LU632_RS09955	0.40	-1.9
1,901,750	-	pyrD	LU632_RS09955	0.40	-1.6
1,901,753	-	pyrD	LU632_RS09955	0.40	-2.7
1,901,780	+	pyrD	LU632_RS09955	0.43	-1.4
1,901,780	+	pyrD	LU632_RS09955	0.43	-0.4
1,901,781	-	pyrD	LU632_RS09955	0.43	-1.3
1,901,896	+	pyrD	LU632_RS09955	0.54	-1.5
1,901,896	+	pyrD	LU632_RS09955	0.54	-1.9
1,901,896	+	pyrD	LU632_RS09955	0.54	-2.2
1,901,972	+	pyrD	LU632_RS09955	0.62	-1.6
1,901,973	-	pyrD	LU632_RS09955	0.62	-3.3
1,901,976	+	pyrD	LU632_RS09955	0.62	-2.4
1,901,977	-	pyrD	LU632_RS09955	0.62	+0.4
1,902,056	+	pyrD	LU632_RS09955	0.70	-2.3
1,902,059	+	pyrD	LU632_RS09955	0.71	-1.8
1,902,059	+	pyrD	LU632_RS09955	0.71	-4.1
1,902,084	-	pyrD	LU632_RS09955	0.73	-1.6
1,902,086	+	pyrD	LU632_RS09955	0.73	-4.1
1,902,086	+	pyrD	LU632_RS09955	0.73	-1.1
1,902,086	+	pyrD	LU632_RS09955	0.73	-2.3
1,902,087	-	pyrD	LU632_RS09955	0.73	-3.1
1,902,369	+				-0.9
1,902,412	+				-0.1
1,902,435	+				+0.7
1,902,435	+				+0.1
1,902,436	-				+0.6
1,902,436	-				+0.5
1,902,574	+		LU632_RS09960	0.10	-1.6
1,902,583	-		LU632_RS09960	0.12	-2.7
1,902,790	+		LU632_RS09960	0.50	+0.2
1,902,790	+		LU632_RS09960	0.50	-0.4
1,902,791	-		LU632_RS09960	0.50	+0.2
1,902,791	-		LU632_RS09960	0.50	-1.0
1,902,791	-		LU632_RS09960	0.50	-1.4
1,902,812	-		LU632_RS09960	0.54	-0.0
1,902,930	+		LU632_RS09960	0.75	-1.0
1,902,930	+		LU632_RS09960	0.75	+1.5
1,902,973	+		LU632_RS09960	0.83	-0.7
1,902,973	+		LU632_RS09960	0.83	-2.1
1,903,137	+				-0.2
1,903,138	+				-1.8
1,903,138	-				-1.1
1,903,139	+				-0.4
1,903,139	+				-0.6
1,903,142	+				+1.2
1,903,143	-				-3.1
1,903,156	+				+0.7
1,903,224	+				+0.1
1,903,225	-				-0.6
1,903,255	-				-0.1