Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09915

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,891,050	-		LU632_RS09905	0.88	+0.3
1,891,053	+		LU632_RS09905	0.89	+0.4
1,891,054	-		LU632_RS09905	0.89	-0.6
1,891,107	-				+1.0
1,891,110	+				+0.6
1,891,111	-				-1.3
1,891,176	-				+2.7
1,891,312	-				+2.8
1,891,350	+				-0.1
1,891,964	+				+0.2
1,891,986	+				-0.3
1,892,006	+				-3.0
1,892,079	+				-1.6
1,892,079	+				-2.7
1,892,080	-				-2.3
1,892,080	-				-3.6
1,892,080	-				-3.1
1,892,083	+				+0.3
1,892,084	-				-3.2
1,892,085	+				-1.5
1,892,085	+				-1.6
1,892,085	+				-1.1
1,892,085	+				-1.1
1,892,086	-				-3.3
1,892,086	-				-1.1
1,892,086	-				-1.6
1,892,089	+				-0.3
1,892,090	-				-2.2
1,892,103	+	ompC	LU632_RS09915	0.11	-2.7
1,892,106	+	ompC	LU632_RS09915	0.11	+0.1
1,892,128	-	ompC	LU632_RS09915	0.13	-2.1
1,892,173	+	ompC	LU632_RS09915	0.17	-3.1
1,892,184	+	ompC	LU632_RS09915	0.18	-2.1
1,892,251	+	ompC	LU632_RS09915	0.24	-1.7
1,892,285	-	ompC	LU632_RS09915	0.27	-2.3
1,892,285	-	ompC	LU632_RS09915	0.27	-2.4
1,892,285	-	ompC	LU632_RS09915	0.27	-2.5
1,892,285	-	ompC	LU632_RS09915	0.27	-2.7
1,892,303	-	ompC	LU632_RS09915	0.29	-2.3
1,892,315	-	ompC	LU632_RS09915	0.30	-1.7
1,892,328	+	ompC	LU632_RS09915	0.31	-1.7
1,892,343	+	ompC	LU632_RS09915	0.32	-0.3
1,892,350	+	ompC	LU632_RS09915	0.33	-1.9
1,892,350	+	ompC	LU632_RS09915	0.33	+1.7
1,892,351	-	ompC	LU632_RS09915	0.33	-1.9
1,892,351	-	ompC	LU632_RS09915	0.33	-3.2
1,892,353	+	ompC	LU632_RS09915	0.33	-0.2
1,892,354	-	ompC	LU632_RS09915	0.33	-1.6
1,892,487	+	ompC	LU632_RS09915	0.45	-2.5
1,892,487	+	ompC	LU632_RS09915	0.45	-0.7
1,892,488	-	ompC	LU632_RS09915	0.45	-2.7
1,892,488	-	ompC	LU632_RS09915	0.45	-0.1
1,892,525	+	ompC	LU632_RS09915	0.49	-1.3
1,892,545	+	ompC	LU632_RS09915	0.51	-4.4
1,892,546	-	ompC	LU632_RS09915	0.51	-1.9
1,892,546	-	ompC	LU632_RS09915	0.51	-0.3
1,892,548	+	ompC	LU632_RS09915	0.51	-0.3
1,892,662	-	ompC	LU632_RS09915	0.61	-1.6
1,892,663	-	ompC	LU632_RS09915	0.61	-2.0
1,892,663	-	ompC	LU632_RS09915	0.61	-3.1
1,892,663	-	ompC	LU632_RS09915	0.61	-2.3
1,892,701	+	ompC	LU632_RS09915	0.65	-1.6
1,892,701	+	ompC	LU632_RS09915	0.65	-2.5
1,892,701	+	ompC	LU632_RS09915	0.65	-0.3
1,892,702	-	ompC	LU632_RS09915	0.65	-2.3
1,892,702	-	ompC	LU632_RS09915	0.65	-2.1
1,892,731	+	ompC	LU632_RS09915	0.67	-3.5
1,892,736	+	ompC	LU632_RS09915	0.68	-2.3
1,892,736	+	ompC	LU632_RS09915	0.68	-2.8
1,892,737	-	ompC	LU632_RS09915	0.68	-1.1
1,892,737	-	ompC	LU632_RS09915	0.68	-2.1
1,892,737	-	ompC	LU632_RS09915	0.68	+0.7
1,892,839	+	ompC	LU632_RS09915	0.77	-2.3
1,892,856	+	ompC	LU632_RS09915	0.79	+0.3
1,892,890	+	ompC	LU632_RS09915	0.82	-2.1
1,892,891	-	ompC	LU632_RS09915	0.82	-3.5
1,892,925	+	ompC	LU632_RS09915	0.85	-4.4
1,892,925	+	ompC	LU632_RS09915	0.85	-2.8
1,892,975	+	ompC	LU632_RS09915	0.89	-3.4
1,892,978	-	ompC	LU632_RS09915	0.90	-2.6
1,893,013	+				-1.1
1,893,013	+				-1.1
1,893,014	-				-1.3
1,893,019	-				-3.2