Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09620

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,823,344	+		LU632_RS09615	0.62	-1.9
1,823,344	+		LU632_RS09615	0.62	+1.6
1,823,352	-		LU632_RS09615	0.63	+1.5
1,823,357	+		LU632_RS09615	0.63	-1.5
1,823,492	+		LU632_RS09615	0.71	+0.3
1,823,507	+		LU632_RS09615	0.72	+1.3
1,823,635	-		LU632_RS09615	0.80	-0.5
1,823,641	-		LU632_RS09615	0.80	+1.3
1,823,814	+				+1.3
1,824,095	+				-1.4
1,824,109	-				-2.1
1,824,137	-				+0.3
1,824,137	-				-2.6
1,824,141	-				-1.5
1,824,236	+				-0.8
1,824,236	+				-2.7
1,824,236	+				-1.7
1,824,237	-				-0.5
1,824,237	-				-3.1
1,824,241	+				+0.5
1,824,284	+				-1.7
1,824,284	+				+1.4
1,824,285	-				+1.5
1,824,285	-				-0.3
1,824,303	-				+0.1
1,824,380	-		LU632_RS09620	0.10	-0.3
1,824,582	+		LU632_RS09620	0.67	+0.5
1,824,582	+		LU632_RS09620	0.67	-2.1
1,824,582	+		LU632_RS09620	0.67	-0.5
1,824,582	+		LU632_RS09620	0.67	-1.0
1,824,582	+		LU632_RS09620	0.67	-1.6
1,824,583	-		LU632_RS09620	0.67	-3.1
1,824,583	-		LU632_RS09620	0.67	-1.1
1,824,665	+				-1.0
1,824,669	-				-0.3
1,824,677	+				-0.2
1,824,834	+				+0.3
1,824,923	-				-2.3
1,824,924	+				+1.3
1,824,995	-		LU632_RS09625	0.12	-0.9
1,825,095	-		LU632_RS09625	0.50	+0.5
1,825,122	-		LU632_RS09625	0.60	+0.4
1,825,182	+		LU632_RS09625	0.83	+0.5
1,825,189	+		LU632_RS09625	0.86	+0.7
1,825,328	-				+0.6
1,825,431	+				-2.2
1,825,431	+				-0.7
1,825,432	-				-0.6
1,825,432	-				-0.1
1,825,477	+				+0.0
1,825,477	+				-0.1
1,825,529	+				+0.3
1,825,529	+				-0.2
1,825,564	-				+0.2
1,825,564	-				+0.3
1,825,564	-				+1.8
1,825,569	+				-0.1
1,825,606	-				-0.3
1,825,606	-				-0.9
1,825,614	+				+0.4