Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09525

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
1,802,127	+				+0.6
1,802,128	-				+0.8
1,802,152	+				+1.3
1,802,152	+				-0.9
1,802,153	-				-1.2
1,802,153	-				-1.8
1,802,240	+				+0.0
1,802,297	+				+0.0
1,802,298	-				-0.1
1,802,298	-				-0.2
1,802,303	-				-2.3
1,802,399	-				+0.9
1,802,459	+		LU632_RS09520	0.26	-1.2
1,802,460	-		LU632_RS09520	0.27	-1.2
1,802,480	+		LU632_RS09520	0.37	-1.0
1,802,582	+				-0.1
1,802,689	+				-0.5
1,802,690	-				+0.3
1,802,691	+				-2.1
1,802,692	-				+1.0
1,802,716	+				-0.5
1,802,717	-				-0.8
1,802,769	-				+1.7
1,802,821	-				+0.9
1,802,949	+		LU632_RS09525	0.12	+0.5
1,802,998	+		LU632_RS09525	0.15	+0.5
1,802,998	+		LU632_RS09525	0.15	-0.0
1,803,070	+		LU632_RS09525	0.19	-0.3
1,803,070	+		LU632_RS09525	0.19	+0.3
1,803,071	-		LU632_RS09525	0.19	-2.1
1,803,071	-		LU632_RS09525	0.19	-2.3
1,803,071	-		LU632_RS09525	0.19	+1.0
1,803,148	+		LU632_RS09525	0.24	+2.3
1,803,192	+		LU632_RS09525	0.27	-0.9
1,803,330	+		LU632_RS09525	0.36	+0.3
1,803,411	+		LU632_RS09525	0.41	+0.3
1,803,472	+		LU632_RS09525	0.44	+1.3
1,803,472	+		LU632_RS09525	0.44	+1.7
1,803,472	+		LU632_RS09525	0.44	-1.2
1,803,473	-		LU632_RS09525	0.45	-0.2
1,803,473	-		LU632_RS09525	0.45	+0.3
1,803,481	+		LU632_RS09525	0.45	-2.1
1,803,481	+		LU632_RS09525	0.45	-1.1
1,803,481	+		LU632_RS09525	0.45	-0.5
1,803,481	+		LU632_RS09525	0.45	+0.1
1,803,482	-		LU632_RS09525	0.45	-0.8
1,803,482	-		LU632_RS09525	0.45	-1.8
1,803,482	-		LU632_RS09525	0.45	-1.3
1,803,483	+		LU632_RS09525	0.45	+0.1
1,803,484	-		LU632_RS09525	0.45	-1.1
1,803,484	-		LU632_RS09525	0.45	-0.2
1,803,485	-		LU632_RS09525	0.45	-0.7
1,803,923	-		LU632_RS09525	0.73	+0.1
1,804,056	+		LU632_RS09525	0.81	+0.9
1,804,059	+		LU632_RS09525	0.81	-1.2
1,804,158	+		LU632_RS09525	0.88	+0.2
1,804,214	-				+0.0
1,804,222	-				-2.4
1,804,222	-				-0.1
1,804,317	+				+0.5
1,804,322	-				-0.7
1,804,435	+				+0.1
1,804,472	-				+2.0
1,804,526	-				+0.2
1,804,583	+		LU632_RS09530	0.25	+1.1
1,804,603	-		LU632_RS09530	0.34	-0.2
1,804,608	+		LU632_RS09530	0.36	+1.5
1,804,665	+		LU632_RS09530	0.62	+0.7
1,804,666	-		LU632_RS09530	0.63	-0.4
1,804,679	+		LU632_RS09530	0.69	+0.8
1,804,680	-		LU632_RS09530	0.69	-1.1
1,804,680	-		LU632_RS09530	0.69	+0.4
1,804,723	+		LU632_RS09530	0.89	-0.0
1,804,724	-				+0.4
1,804,724	-				-0.0
1,804,724	-				-0.7
1,804,828	+				-2.5
1,804,828	+				+0.8
1,804,888	+				+0.7
1,804,888	+				+0.8
1,804,889	-				+1.8
1,804,889	-				+1.3
1,804,892	+				-0.4
1,804,893	-				-0.6
1,804,975	+		LU632_RS09535	0.11	-2.4
1,805,126	+		LU632_RS09535	0.31	+1.8
1,805,237	+		LU632_RS09535	0.46	+1.4
1,805,237	+		LU632_RS09535	0.46	+1.4
1,805,238	-		LU632_RS09535	0.46	+1.8
1,805,261	+		LU632_RS09535	0.49	+0.8
1,805,304	-		LU632_RS09535	0.54	+0.1